Tsol006678.1
Basic Information
- Insect
- Thelaira solivaga
- Gene Symbol
- -
- Assembly
- GCA_947397855.1
- Location
- OX377613.1:484558-487041[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0014 0.084 13.6 5.8 2 23 241 262 240 262 0.97 2 12 0.011 0.68 10.7 2.3 1 23 268 293 268 293 0.93 3 12 0.0022 0.14 12.9 0.3 3 23 302 325 300 325 0.93 4 12 0.00045 0.027 15.1 2.3 1 23 336 358 336 358 0.98 5 12 3.1e-06 0.00019 21.9 0.2 1 23 365 387 365 387 0.98 6 12 0.015 0.9 10.3 0.1 1 23 393 415 393 415 0.98 7 12 0.0093 0.57 11.0 4.8 1 23 421 444 421 444 0.98 8 12 0.044 2.7 8.8 2.3 1 23 450 472 450 472 0.94 9 12 0.00025 0.015 15.9 2.7 2 23 479 500 478 500 0.96 10 12 1.1e-06 6.7e-05 23.3 0.4 1 23 604 627 604 627 0.97 11 12 0.0011 0.065 13.9 5.6 1 23 633 655 633 655 0.97 12 12 5.4e-05 0.0033 18.0 2.0 1 23 661 683 661 683 0.96
Sequence Information
- Coding Sequence
- ATGGATATTGATGCCATTTGTCGAATTTGCTTAGAATATTTACAAAATGGCAGTTCGTATGATCTGTTTTCAGTCCCCGGATTAGCTAAAAAATTATGTATGTGCACATCATTGTCAGTGGAACCACAGGATGGGTTCCCAAAGAATATTTGTGGGGTTTGCTATACCCGCCTCAGCGATATGGCCGAATTTCAAAAGCTATGCGTTGATTCGGTTCAAAAATTCCAAGAATTAATGGCCAGCAATACAATTTCGTGCCCGCCTACTTTTGATATTATGGAAGCGCCCGCCACAGCTCCAATTGAAGGTGTACAAATGCCTGAGGATGAGGATGACAATATAAATTTTGATCCTTTGCTTACCAATCACAAGATGGAAATGTTAGAAAATGAGGAAGATGTGTTCAAAATGTTAGAAACTGTCGATAAAGAGGAAGTCGAAGAGATACCAAGTAAGGTGGAAGGTGAGTTTTTAAgtgaggattccagtgagcatgataatgacaccgatgaagattttcaatttcctgatgtgggagacaatggtaatgatgatgatagtgacagtgatgatgataaACCTTTAGCATCTAGAATACGAAGTATTAAAAAAGAAGTTAAAGAAGAAAATGAAAAGGTAGAAGCAGATAATAAAGATCCAAAAGTGAAGCCGAAACGTAAAAGAATACCACCTGCTGAGCGCCATTTACATCGGATAATTGAATGTCACATTTGTCATCAGAAATTCAAGAAGACTAAAAACTATGAAGAGCACATGAAATACCACAACGACAAGTTACCATTCCAATGTGAAGTGGAAAACTGTAAACGAGGATTCACTACAGCATACGGCTTACGTTTGCATGTTGAACATTGTCATGATGAAACTGTAGAAAAAATCCCATGCACTCAAGAGGGTTGTGACATGAAGTTCACTCGTCGTCGCGTACTTAATTGGCATTTGAAGAGGGTTCATAAGATTGCGAAGGAAGATGTTCCTAGAAATTATCCTTGTACTGAGTGCGAAAAGGTATTTAAGTGTCCTATGGCTTTGAAAAAACACATGTTTAAACATACTGGACAAGAATTGCCCTTTCCTTGCAATATTTGCGGTAAACGTTTTGTCATCAATAGCGCTCTAAAAGATCATTTAATGCGTCATGCCGGCATTAAAAATTATGTGTGCCCATATTGCGGCGTAGGTAAAACTACACGTCAAGAATGGAACACACACATTGCCACACATAGTACAGAGAAAAAATTTAAATGTCATCTCTGCCCGCATGCCTCGCACAATAAGCAGAATCTACGTATGCACGTGCGAGTTGTACATGAAAAAATTAAAGATTATGCTTGTCAGTATTGTGGTAAACAATTCGGGAAATCGAATGCATGTAAAATGCACGAAATGACACACACTGGTGAAAAGAGATGTGAGTGTAAAGTATGCGGCAAACGTTTCTTATACCCTAAAGGTCTTACTAAACATTTGAAGACTCATGAAAAACGTGTATTGCGGGCTATAGAAGTTTATAGAAAACGGCAGGTTGAATTGGGCGAAGTGCAAGCCGAAGAAACTGAACCGATTCCAGATTTACCAAATCCGGAAAACACCCAGGAATCTCATCAGAAAGTAGCAGATGAAATTCTTAAAGTTTGTGCAGATTCTGTTAATTCTATACCGAAAGATCCGAGACGTGTTGAGCGTGTGAATATTGCTGAGTTAGCTGGCACAGCTGTCAATCCCATTCCACAGGTAGCTTTGCCTTCTTGGTCTCCACAGATAAATTTCATGATGAAAGAAGGCAAATACACGTGCCCCGATTGCGGTCAGGGTTTCAATGGTTCTGGTAATCTCCGACGTCATCATAAAATTGTACATCAGGGTGTAAAAGATTTCGCTTGCAGGTATTGTCACAAGCGTTTTGCCAAGGCACAAACtctaaaacatcacgaaatgacccatacaggtgaaaagccacatgcctgttctcattgtgatATGCGTTTCATTCAAGTTGTTGCCTTGAAACGTCATATGAAAGTACACCAAGAACGGCCTACTTACATACCTAAAACTGCTTTCAAAGCTAAAGTAGAATTGGTTAAGCAAGAGCGTAAAAAATATGTCGTTAAACGTGAACAGCAGAAAGAACGCGAAGCAATAGCTGAAGAAGCTCGAAGACAGTTAGAAGAGCTTAAACGAAAAGAAGAGGATCTACAACGTCGTCAGCGTGAAGCTTTGGCTAACTTGCCAAAAGCAATACCAAAAGAACGTCTGCCACCAGGTGCTGATATTTCAATAGCCACCAATGTGTTACCAAGCGATTTAGCCAGTAGTGCGAGCACAAATGTGTCTAATACTACTACAACTACCACTGCTGCTGGTAAAAATACAGAAACTTTCACTTCAGACGGTGCTCTGAAAACGGAATTTGACGATAACGATGATATATCGTACCCTGAAGTTATGGATAATTATTAA
- Protein Sequence
- MDIDAICRICLEYLQNGSSYDLFSVPGLAKKLCMCTSLSVEPQDGFPKNICGVCYTRLSDMAEFQKLCVDSVQKFQELMASNTISCPPTFDIMEAPATAPIEGVQMPEDEDDNINFDPLLTNHKMEMLENEEDVFKMLETVDKEEVEEIPSKVEGEFLSEDSSEHDNDTDEDFQFPDVGDNGNDDDSDSDDDKPLASRIRSIKKEVKEENEKVEADNKDPKVKPKRKRIPPAERHLHRIIECHICHQKFKKTKNYEEHMKYHNDKLPFQCEVENCKRGFTTAYGLRLHVEHCHDETVEKIPCTQEGCDMKFTRRRVLNWHLKRVHKIAKEDVPRNYPCTECEKVFKCPMALKKHMFKHTGQELPFPCNICGKRFVINSALKDHLMRHAGIKNYVCPYCGVGKTTRQEWNTHIATHSTEKKFKCHLCPHASHNKQNLRMHVRVVHEKIKDYACQYCGKQFGKSNACKMHEMTHTGEKRCECKVCGKRFLYPKGLTKHLKTHEKRVLRAIEVYRKRQVELGEVQAEETEPIPDLPNPENTQESHQKVADEILKVCADSVNSIPKDPRRVERVNIAELAGTAVNPIPQVALPSWSPQINFMMKEGKYTCPDCGQGFNGSGNLRRHHKIVHQGVKDFACRYCHKRFAKAQTLKHHEMTHTGEKPHACSHCDMRFIQVVALKRHMKVHQERPTYIPKTAFKAKVELVKQERKKYVVKREQQKEREAIAEEARRQLEELKRKEEDLQRRQREALANLPKAIPKERLPPGADISIATNVLPSDLASSASTNVSNTTTTTTAAGKNTETFTSDGALKTEFDDNDDISYPEVMDNY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01019615;
- 90% Identity
- iTF_00742148;
- 80% Identity
- -