Tatr004354.1
Basic Information
- Insect
- Thecophora atra
- Gene Symbol
- -
- Assembly
- GCA_937641085.1
- Location
- CALMRH010000010.1:2504356-2505833[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.27 2.8e+03 -0.7 0.1 26 52 269 295 244 296 0.78 2 5 4.8e-05 0.5 11.3 0.1 22 47 321 346 311 352 0.84 3 5 0.065 6.8e+02 1.3 0.0 21 44 348 371 345 376 0.85 4 5 7.3e-05 0.77 10.7 0.1 21 43 376 398 365 404 0.85 5 5 0.0019 20 6.2 0.1 21 44 404 427 399 437 0.83
Sequence Information
- Coding Sequence
- ATGAGTTCAGACGAAGCTGAAGTTGTTATATGTCGGTCTTGCATTAACGAGTGCATAGAATATAAGAGCATTTATCGTCAAGGAATAATACTGGGCGAGCTAACGACATTGGCTGCATTGCTAAATGATTGCACTAACTTGGATTTCGAGAAACAAGAAGATTTTATGCCTTCTAATATGTGTAATATGTGCATAGGAAATTTGGCCAAATTATATGCCTTTAAACAGATGGTGATTAAAGCCAACGAAACACTACGAAGTCAGCATAGTGAGCTTACCAGTGAAGATCCACGAATTGAAGACATTCATGATACGGTAGAGAGTAGTGATCAAAAACAGAAAGAAGAACTGCATCAGTCTTACGTCACGTTGACTGTTGTGGAGGAGCGCAAATTGGAGCCGTACAATATGCACTTGCGTAACGAAACCATCGACGATACAGATGAGTCCCAGAACAGTTCTGAACCATTAGAACAGCAGCTGAATGTAGTATTAGAAGATGGGGAACACGAAGTTATATACCCGGAGGAAGAGATGGAGTTGGAGGAAAACTTTAAGGTTGAAGATGAAGATTATGAATCTGAGACGTATATGGTTACTTTGGAAGATACTCCTCAGTGTGCAACGACTACCATTTCATCATCGAAACTTGCGGAAAGCGCCCATCAACCAACTGTTGCATTGATTAACAAGCAAAAAACTGATATCACGCCGAAAGACTCCTTGGTAGCAAAGCGCATTAAGGATGCTGTTGTAAAAACGCGGATGAAACACTCCGTGACGAAACCTCCAAACCCTGAACTCCAATGCCAGGTTTGCGGTAAACAACTCAGCAATGCGAATTCCTTTCGGTATCACATGCAGCTCCACTCCGACGCAACACCTTTCCTTTGCAGTCTCTGCGGAGAAGGGTTCAAGACCCGCAACGCATATGAAGGGCACATGTCTTTGCATGATCCAAATAATCCAAATACATGTGAAATCTGTGGCAAGACGTATCGCCAACCATCATCGCTACGAGCACATATGTTAATACACACGGGCGAGAAGCCATTTCAATGCGACATTTGTGGTAAGGGAATGACCCAGAAATCGGGATACAAGAAGCATATGTTGACTCATACAGGAGAAAAACCTCACACTTGTGATATCTGCGGTCGTGCCTTCAGATACTCAAGCAACCTTATATCCCATAAGCGTCATCATAGCGGCGAAAAACCCTATGATTGTCCGTTATGTGAAAAAAGTTTTTCCACTACCGAGCAATTAAAGCGACATACACTAGTTCACACAGGTGAAAAACCATTTAGCTGTGAACATTGCAGTAAACGTTTCAACCGCCGCAGTTCATTGATAGCTCATTGCCAGACGCATGACCCCAATCGTCGAGCAGAAAAAAAGCAAATTAAGATCCAAGCGTAG
- Protein Sequence
- MSSDEAEVVICRSCINECIEYKSIYRQGIILGELTTLAALLNDCTNLDFEKQEDFMPSNMCNMCIGNLAKLYAFKQMVIKANETLRSQHSELTSEDPRIEDIHDTVESSDQKQKEELHQSYVTLTVVEERKLEPYNMHLRNETIDDTDESQNSSEPLEQQLNVVLEDGEHEVIYPEEEMELEENFKVEDEDYESETYMVTLEDTPQCATTTISSSKLAESAHQPTVALINKQKTDITPKDSLVAKRIKDAVVKTRMKHSVTKPPNPELQCQVCGKQLSNANSFRYHMQLHSDATPFLCSLCGEGFKTRNAYEGHMSLHDPNNPNTCEICGKTYRQPSSLRAHMLIHTGEKPFQCDICGKGMTQKSGYKKHMLTHTGEKPHTCDICGRAFRYSSNLISHKRHHSGEKPYDCPLCEKSFSTTEQLKRHTLVHTGEKPFSCEHCSKRFNRRSSLIAHCQTHDPNRRAEKKQIKIQA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01426966;
- 90% Identity
- iTF_01426966;
- 80% Identity
- iTF_01426966;