Tatr006454.1
Basic Information
- Insect
- Thecophora atra
- Gene Symbol
- -
- Assembly
- GCA_937641085.1
- Location
- CALMRH010000019.1:2594781-2595293[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.4e-18 9.8e-14 52.1 0.1 223 298 1 73 1 75 0.82 2 2 0.11 1.1e+03 -0.6 0.7 133 160 83 113 76 119 0.48
Sequence Information
- Coding Sequence
- ATGCGGCTAAAGCATTTCAATGGCGATATACAGACTCTCAATGACGAGATACACCGCTTGAGGTCAGAGTTGGAAGAAATAAAATCGAGAGACTTTGGAAACACTCTCACTACAAATCCAGTGCAATCGCCAGATGAATGGCAATCCGAAGTCCACAGAGAAGCCAACAAAATCATTTCGACTTACAAATTTCGACTACAACAGGCTGAGCAGGAGATTTGCGGTCTTGAAGCTAATCTAGAACGATCTGAGGCACAGTTGCAGCGTTACCAAAGCGCTGCAGAAGCTGCAAAACAAGCTGAAGCAGAGCTGAAGGGCGAACACAGTAAATTGCAGCGACAAGAATTGTTAGTAATACACTTTTGGGACGAATGCCATTGCCAATAG
- Protein Sequence
- MRLKHFNGDIQTLNDEIHRLRSELEEIKSRDFGNTLTTNPVQSPDEWQSEVHREANKIISTYKFRLQQAEQEICGLEANLERSEAQLQRYQSAAEAAKQAEAELKGEHSKLQRQELLVIHFWDECHCQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -