Tatr006456.1
Basic Information
- Insect
- Thecophora atra
- Gene Symbol
- Lrrfip1
- Assembly
- GCA_937641085.1
- Location
- CALMRH010000019.1:2610515-2613531[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-65 1.5e-61 209.1 20.0 1 222 54 263 54 265 0.94
Sequence Information
- Coding Sequence
- ATGTCGCAAGAGGCAGAAATTGCTTCGCTTGGTGAAGCTCTGTGTGAAGCAAACGAAAAAATTGCCACCCATGAGCGAAGAGAAGTTGCTGCAGATGCGCCTCTTGTTATTCTTTCTCTATGGTTGATTGTACAATTTTTGGGGGAAGCAAATCGGATTGCTGAAGCGCGCCTTTCCGCTCGCAGACAGGCTCGCACAGAGGCGCGACAGATACGCATGCAGGAGTTGGAAAGACAACAAAAGAATCTGGAGCAGAAAGCAGATCTTGCTTTTAACATGCATGCCGCTTCTGCTTTGGAACCGCAGTCAAGAACAAGTCTTGCAAATGGCAGAAGAGCCAGCACGAATTCGTCACATCGCAGCAGTGAGTGTTCTTTGGAGGAAGAAGTTCATCACTCGGTCGATCCGAAGGAAAAATTGCAAGATGCTGAAGAACGGTTCCGCAAAGCCATGCTTTCTAACGCGCAACTAGATAATGAGCGTGCATCTCAGACCTATCTAATTCAGCACTTGAAGGATCAGTTGGAGGAAATCGCAGAAGTGAACATGCAACTGCAGCGCGAACTCAAAGAGAAAACTCGAGATTGCCACGAAAAGCAGCGATGTGTAGACAAGCTAAGTGATGATCTGAGGCTGCTGCAGGGCGAACTGAGCGTACGTGATGCGTTGATATCGGAGCACGGTTTCGTCATAGCTGTTGTGGAAAACGACGATGGCACAAATGCCAAGCAAACACTCATCTCTGCAGAAAATGCTCAACTTTTGGCTTCGGTGCAAGGTTCCTTGGGTTTGTATGACTACAAGCAATAA
- Protein Sequence
- MSQEAEIASLGEALCEANEKIATHERREVAADAPLVILSLWLIVQFLGEANRIAEARLSARRQARTEARQIRMQELERQQKNLEQKADLAFNMHAASALEPQSRTSLANGRRASTNSSHRSSECSLEEEVHHSVDPKEKLQDAEERFRKAMLSNAQLDNERASQTYLIQHLKDQLEEIAEVNMQLQRELKEKTRDCHEKQRCVDKLSDDLRLLQGELSVRDALISEHGFVIAVVENDDGTNAKQTLISAENAQLLASVQGSLGLYDYKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -