Tpit006046.3


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Thaumetopoea pityocampa
Gene Symbol
-
Assembly
GCA_017165845.1
Location
WUAW01005480.1:2536-27685[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00026 0.024 15.8 0.2 3 23 146 166 145 166 0.97
2 16 7.7e-07 7.1e-05 23.7 1.2 1 23 172 194 172 194 0.99
3 16 4.8e-06 0.00044 21.2 2.7 1 23 200 222 200 222 0.99
4 16 3.3e-06 0.0003 21.7 2.6 1 23 237 259 237 259 0.98
5 16 0.00031 0.029 15.5 0.5 1 23 274 296 274 296 0.98
6 16 7.8e-05 0.0073 17.4 3.1 1 23 311 333 311 333 0.98
7 16 8.4e-07 7.8e-05 23.6 1.7 1 23 348 370 348 370 0.99
8 16 0.00013 0.012 16.7 2.8 1 23 376 398 376 398 0.98
9 16 4.6e-06 0.00043 21.3 2.0 1 23 404 426 404 426 0.99
10 16 0.031 2.9 9.2 1.8 1 23 433 455 433 455 0.98
11 16 6.6e-07 6.1e-05 23.9 1.8 1 23 461 483 461 483 0.99
12 16 0.036 3.3 9.0 1.8 1 23 490 512 490 512 0.98
13 16 2.1e-06 0.00019 22.3 1.5 1 23 518 540 518 540 0.99
14 16 0.0017 0.16 13.2 0.3 1 20 546 565 546 568 0.93
15 16 1.9e-05 0.0017 19.4 1.4 2 23 575 596 574 596 0.97
16 16 2.5e-06 0.00024 22.1 1.3 1 23 602 625 602 625 0.97

Sequence Information

Coding Sequence
ATGGGGGTCCCCGTGCCGCCCCCTGGCGACCTACTAGCCACGATATCCATGTTCGAACAGCAAATCAAGGCAGAACCCATGAATTTCTATCCTTCCCATCCTCACATTCACGCTGGTCCCCCAACCATAATCCGATCAGACTCGAACCACCCCATCATCAACATGAACCAGCATCATCAGCACCAGGAAGACTCGAAGGACAGCCTCATAATACAGCAGCAAGTACATCAGCACGATCTCATGGAACAGCACCAACAGGATATGCAGCAAGACGACGAGcTTAGCTTTAAAGGCATGGAGGATGAAGGCGTGGACATGGACATGGATGGGCGACAGTGTTCGCAGGGTCTGGGGATTGATATGGGGTCAGTTCAAACAAAAATGGAGGTGTCGAACGGGGGTGGGCAGTCGGCGCCGCGCTCCAAGCCCCAGGCGTGTAAGgtgtgcaataaagtgctGTCGTCGGCGTCCTCGTATTACGTGCACATGAAGCTGCACTCCGGGCACAAGCCCTTCCAGTGCACGGTTTGTGACGCAGCTTTTTGTCGGAAGCCTTACCTGGAGGTCCACATGCGCACGCACACCGGGGAGCGCCCGTTCCAGTGCGACCTCTGCCTCAAACGGTTCACGCAGAAGTCCAGTCTCAACACGCACAAGCGGGTCCACACAGATGAGCACATGCGCGCGTTGTTGGCGAAGGACCGGCCCTACAAGTGTGACCTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGACACAAGAAAATCCATACGGAGGAGCACAAGCGCGCGCTGCTGGCTAAGGAACGCCCCTACCAGTGCGGCGTCTGCTTTGTGCAGTTCACGCAGAAGTCGAGTTTGGGCCGGCACGGGAAGATACACACCGAGGAGCACAGGCGGGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACGTCTGTTTTATGCGCTTCACCCAGAAGTCCAGCCTGGGACGACACGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCGGTGCGACGTCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGCACTCATAAGCGTATTCACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGgcGAGCGGCCCTATCAGTGCGACGCGTGTCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACATAGACGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATATCTGGAGATACACACGCGCACCCACACCGGCGAGCGGCCGTACGAATGCGACATCTGCTTGAAGCGCTTCACGCAGAAGTCCAGTCTCAACATACACAAGCGGACGCACTCAGTGCAGGGCCGCCCGTTCCAGTGCCTGCAGTGCCCGGCCGCCTTCACCTGCAAGCAGTACCTCGAGATACACAACCGCACGCACACCGGCGAGCGGCCCTACCAGTGCGACGTGTGCCTCAAGAGGTTCGCGCAAAAATCTACGCTCAACATACACAAACGAACGCACACAGGTGAACGCCCGTACGCTTGCGACATATGCCAGAAGAGATTTGCTGTGAAAAGCTATGTGACAGCGCACAGGTGGTCGCACGTGGCCGACAAGCCGCTGAGCTGCGACCAGTGCTCCATGACGTTCACGTCCAAGTCGCAGTTCGCGCTGCACCTCCGCACGCACTCGGCCACCTCGTGCTACGAGTGCAGCGTGTGCGGCCGCTCCTTCGTCAGGGACAGCTACTTAATAAGGCACCACAACCGCGTGCACCGCGAGAACCACAGCAACGTGTCCGCGAACAGCGCCGGCGCCATCAACAGCGTCGCCACCAACACCAACAACTCCAGCAGCAACTACGACTCGCCCGGCGTCTGCGACCTAAGCTTTGTTCCGATGGTGAATCGTTACATGACTTCGCAAGGGACCCAAGTGTCCTTGCAAGACAGCAAAATGTCAGCGTTGTCACCTCAGTCGATTGCGTCTATATCGTCGCCCCCTCCTTCTCACACCCCCACGCCTCAGCCGTTGTCCACTCAGATGCACCTCGCAGACTGA
Protein Sequence
MGVPVPPPGDLLATISMFEQQIKAEPMNFYPSHPHIHAGPPTIIRSDSNHPIINMNQHHQHQEDSKDSLIIQQQVHQHDLMEQHQQDMQQDDELSFKGMEDEGVDMDMDGRQCSQGLGIDMGSVQTKMEVSNGGGQSAPRSKPQACKVCNKVLSSASSYYVHMKLHSGHKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALLAKDRPYKCDLCQMRFTQSSSLNRHKKIHTEEHKRALLAKERPYQCGVCFVQFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHVCFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYRCDVCDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYQCDACLKRFTQKSSLNIHRRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYECDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLSCDQCSMTFTSKSQFALHLRTHSATSCYECSVCGRSFVRDSYLIRHHNRVHRENHSNVSANSAGAINSVATNTNNSSSNYDSPGVCDLSFVPMVNRYMTSQGTQVSLQDSKMSALSPQSIASISSPPPSHTPTPQPLSTQMHLAD*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00686557;
90% Identity
-
80% Identity
-