Tmat020138.1
Basic Information
- Insect
- Thalpophila matura
- Gene Symbol
- ZIPIC
- Assembly
- GCA_948465475.1
- Location
- OX419190.1:16824095-16825504[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.0005 11 6.5 2.6 13 30 144 161 135 167 0.85 2 7 3.5e-07 0.008 16.6 0.7 9 49 167 208 162 211 0.87 3 7 0.00052 12 6.5 0.3 21 44 240 263 234 278 0.88 4 7 2.1e-05 0.47 10.9 0.2 22 46 297 321 293 327 0.89 5 7 0.079 1.8e+03 -0.5 0.0 38 53 341 356 328 365 0.69 6 7 0.0011 24 5.5 0.1 23 48 379 404 373 407 0.91 7 7 0.52 1.2e+04 -3.1 0.1 5 16 456 467 453 467 0.79
Sequence Information
- Coding Sequence
- ATGGATGAAAAACTGTGCAGATTGTGTTGTCAGAATGATGCCACTTCCTACATCTTTGCTAAAGAAGTGGACAATATCGCAATATCCGCAAAAATAATGTATTGTTGTCCGAATGTAAATATTGAAGTCGGGGACGGACTTCCATCACATATTTGTAATAGCTGTGAAAACGAGCTCGCAGCCTGCTACCAATTTGTATTGAAATGCGAAGCATCCGATAAGAAGTTAAGATCTCAAGCTTTGGAAGTAATTTCCCAAGTTATCACAGATCTCGACGAATGCTCGAAAATTGAAGTAAAACTTGAATTAGAGGGTAACAGTGACGATGATCACCTTTTCGAAGACTTACAAAACGAAGAAATTAAGTGTAATAAAATGGAAATTAAATTGGAAAGTATTGGTCCAAAGATAACCCACAAACGAAAGCCATACAAACAGAGATCTAAATACAAAAGCATGGAGCCCTGCACATGCTCCATCTGTGGCCGACAGTGTGCTAACCCATCAACCTTTAAGGTACACATGAGGTCCCACACTAATGAGAAGCCATACTCCTGTCCTTCATGTGATAAGAGATACAAAGACAACAGTAATCTTAAACGGCACATCGAAAGAATCCATATGCAACAGAAGAGGCAGCGTAACTTCACCTGTGAGAACTGTGGCAAAAGCTTTTTCACTAAGAATGATGTGACAATTCATATGCGCACACACACTGGGGAAACACCATATACATGCTCAGTATGCACCGTCAAGTTCACACAGATCAGTGCATTACACAGACATAAAAAACGGCACACTGGTGAGAAGGACCACTTATGCCCAGCCTGTCCAAAGAGGTTTTGTACAAAGCAGGAACTGCAAAGTCATGGCCTTGTGCACAGTAATGAGAAAAACTACTCTTGCCCTCTCTGTAATGTATTATTTAAGTACCAAAACAATTTGAGGAAACATGTGCGGCTGCACTCTGAACCGAATAGGTTTGTGTGCAACCACTGTGGACGTACCTTCAGTGTCAAGGGGAACTTGAAGAGCCACATTGATAAGCAACATTCGGAGAAATCCGGACAATGTACTGTTTGTTCTAAAAATGTCGCTAATATTGAAGTACACATGTGGAAACATACGGGGCACAGGCCACTGAAATGTGAACTCTGCACAAGCAGCTTTTACGATTTGAAGGCTTTAGCCCGTCACATGAACTTTAGACATAAGAAAACTGATAGATTTAAGTGTGAAGTTGAAGGGTGTCTGATGACATTTCCATCAAGACCGATGCTCGACTTCCATACTGCTAAGCTGCACAGTACCCACATACCATTTCCATGTGATAGGTGTACAAGAGCGTTTTATAGGAAGAATGATCTTGCCAGACATAAAATTGGCACTCATAAAGAGAGACTTGTTTAG
- Protein Sequence
- MDEKLCRLCCQNDATSYIFAKEVDNIAISAKIMYCCPNVNIEVGDGLPSHICNSCENELAACYQFVLKCEASDKKLRSQALEVISQVITDLDECSKIEVKLELEGNSDDDHLFEDLQNEEIKCNKMEIKLESIGPKITHKRKPYKQRSKYKSMEPCTCSICGRQCANPSTFKVHMRSHTNEKPYSCPSCDKRYKDNSNLKRHIERIHMQQKRQRNFTCENCGKSFFTKNDVTIHMRTHTGETPYTCSVCTVKFTQISALHRHKKRHTGEKDHLCPACPKRFCTKQELQSHGLVHSNEKNYSCPLCNVLFKYQNNLRKHVRLHSEPNRFVCNHCGRTFSVKGNLKSHIDKQHSEKSGQCTVCSKNVANIEVHMWKHTGHRPLKCELCTSSFYDLKALARHMNFRHKKTDRFKCEVEGCLMTFPSRPMLDFHTAKLHSTHIPFPCDRCTRAFYRKNDLARHKIGTHKERLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01425330;
- 90% Identity
- iTF_01425330;
- 80% Identity
- iTF_01425330;