Tmat000234.1
Basic Information
- Insect
- Thalpophila matura
- Gene Symbol
- -
- Assembly
- GCA_948465475.1
- Location
- OX419203.1:3744639-3750515[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.00051 0.035 14.9 0.9 1 23 5 27 5 27 0.92 2 24 0.071 4.9 8.2 0.6 1 23 100 122 100 122 0.98 3 24 0.0017 0.12 13.3 0.2 1 23 126 148 126 148 0.95 4 24 0.17 12 7.0 0.3 2 23 154 176 153 176 0.94 5 24 0.0022 0.15 12.9 3.4 1 23 182 205 182 205 0.95 6 24 8.7e-05 0.006 17.3 0.2 1 23 212 235 212 235 0.98 7 24 5.3e-05 0.0036 18.0 1.6 1 23 241 263 241 263 0.97 8 24 5.8e-07 4e-05 24.2 1.2 1 23 269 291 269 291 0.99 9 24 0.09 6.2 7.8 1.5 1 23 419 442 419 442 0.97 10 24 0.22 15 6.6 0.1 2 23 467 489 466 489 0.94 11 24 0.56 38 5.3 0.1 1 23 513 535 513 535 0.92 12 24 0.00014 0.0096 16.7 0.2 1 23 539 561 539 561 0.98 13 24 0.00015 0.01 16.6 0.5 1 23 566 589 566 589 0.96 14 24 0.01 0.72 10.8 0.4 2 23 596 618 596 618 0.93 15 24 0.033 2.3 9.2 6.6 1 23 625 648 625 648 0.97 16 24 7.8e-05 0.0054 17.5 4.7 2 23 655 676 654 676 0.96 17 24 0.0002 0.014 16.2 1.7 1 23 682 704 682 704 0.98 18 24 0.01 0.7 10.8 0.4 1 23 852 875 852 875 0.94 19 24 0.0035 0.24 12.3 0.6 2 23 901 922 900 922 0.96 20 24 0.014 0.95 10.4 0.5 1 23 944 966 944 966 0.98 21 24 2.7e-05 0.0019 18.9 0.6 1 23 970 992 970 992 0.98 22 24 0.00034 0.023 15.5 1.0 1 23 997 1020 997 1020 0.95 23 24 6.9e-05 0.0047 17.6 0.5 2 23 1027 1049 1027 1049 0.97 24 24 8.6e-05 0.0059 17.3 1.1 1 23 1056 1079 1056 1079 0.98
Sequence Information
- Coding Sequence
- ATGAAAAACCTATACGTTTGTTTTTATTGCCAGAAACAGTTTTCTGATCCAGCAAAACTGAGGGAGCATAACACAGAACACATTTTTCTGACGTCTTCCCAAGTAAAATACGCTGTCTCAAAGCTAAAGAAGTATGAATTAGTCAAAGTAGATATCACTGAAATTGGCTGCAAGCTCTGCGATGACTTGATACCAGATTTTCCATCCCTAAAATGGCACTTGCTAGAGAAGCATAAGAAGAATTTAGATCTCAAATCTGGTGACGGTGTCCTTCCGTTCAAAGTAACGCTAAACGACTTCCAATGCGCCCTCTGTATAGAGAAGTACACAGAGTTCAAGTCACTGAACCAGCACATGAACGTACACTTCCAAAACTTCATTTGCGAGCAATGTGGGACAGGTTTTATAACTCCAGAGCGTTTGAGAACTCATGCGTTTTCTCACGAAACTGGATCCATCCCCTGCGAAAATTGTAACAAATTATTTAGGTCTACTAACGCGAAAAACGAACACTATGCTACCGTACATATGAAAGTAAAACGCCATAGATGTCCACACTGTCCCGAAGCATTTAGAAATTACTTCCAAAGAAACAAACACATATCTAACGTTCACGGCGTAAAGCTAAAAGAATTTAAATGCACCATGTGTCCTAAAGTATTCACTATAAGTGGGAAACTCGGTGTCCATGTGAGGACAGTGCATTTGAAATTAAAAAGGCATTCGTGTGAAGTGTGCGAATGGAAATTTTATTCGAAGTCTGAGCTGAAGGATCATATGGTCAAACATGGAGGAGAGAGGAAATACCAATGCAGCGTTTGCAAGAAGGCTTATGCTAGGAAATACACGCTAAGAGAACACATGAGAATACACGAGAATGATAGGCGTTTTGTGTGCACGATTTGTGGATCCGACACATCTATACCCGATCCGAAGCGAAGAATCATCCCGTTATTCCAAGTCGCATACGACAGGAGCTTATGTAGACCTCTTGGAACTTTAATGGACTTCAGTAGACTCGGACAAAAGAGTTTTAAAAGCTTCTCATCGTCTCCAACAAGAGATTACTCTCCATCCCGTAGTCCTTCTCCAGTTTACCTTGCGACCGCGCCATCACCTTTTATTAATAGACCGCAGACATTGTCTGTTCAAACTGTGAAACAAAAAGCAAAGAAAACTCCAGATATTAGACAAAATGCTTTAGCTGTGTTTGAATTTTCAACGGTCTACCCATTCGTTTATGGGAGCAACAAATTCAAATGCTTCGTTTGTTCACAACCGTTTTTGGATATTAAAGAATTAAAGGTGCACATGCACTCATCCCATACCTTCGCTCCCCTGAAAAGACTAGTCAATAACAGAAGAGAGAACGTTTTAAAAGTAGACGTTAGTGATATAACATGCAAGATATGTTCAGAAAGACCTCCTAATTTAGTTGAATTGAAGCGCCACCTCAAAGAAGTTCACGATAAACCTATGGATTTAGAAATCCAAGACAATATGATACCCTTCAAACTCGAGCTTATAGACGATGCTTACAAATGCGTCATATGTGAGCAGAATTTCATAAAAGTGCGAATTTTAGTCATCCACATGAGCGAACATTTTAATAACTATAGCTGCGAGATTTGTGGCTCAGTTTTCATGACTTTACGTCTTCTAAAAAAACATTTAGAAGTACACGACTCTGGAAACTTTCCTTGCGACCGTTGCAACAAAGTTTTTAGTACTCCTTACAAACGGACACTACATATCCGTGGAGTCCACCTGAAGCAGTGTCCGAGAAGATGTCCAATGTGTCCGGAGAAGTTCAATTCGAATTATAAAAGGACGATCCATTTACAAGATGTGCATAATCAGGAGACGAGGGTACATAAATGCAAGACTTGTGGTCGAGGGTTTAACTTGAAGTATCATCTAGTGTGTCACATACGGTCCGTACATCTTCAGGAGCGCAATCAGCAGTGCGATGTGTGTCATCAAAGGTTTTGTAACAAGGAATCTTTGAAACGACACATGGTTATCCATACTGGCGAGAAGAATCATAAATGCGATGTCTGTGGAATGGCTTTTTTGAGGAGGAAAAATTTGAAGGACCATTTGCGTTTACATGACATTAGGTTCATCCAGAAAACAGATTCAACGATCACTGTGAAAGATGAAGACGGAAAAGAAATTATATTAACGGTCCTCAAATATCCGATATCTTTAGATACTCTAGAATATGAACCTCAAGATTTTGCTGTAAAAGACTATGACTTTAAGAACAAAGTCAAAAAGAAAATTAAAATTAAAAAGTTAAAGAAAACTAACTCCAAGTTAGCAAATATATCCTTGTTGAAAGAACCAGTATCAATAAACAATGTCGATTGGAAAGAAAATATCAATGAACTAGAAAATTCTGTAACATTTAATGTGAAAACTGTGCAAGGATTTCTCTATGGACCTACGAGGAAACGAAACAAAAACGTTGAATACCAGACTTGGAAGCAAAATGCTTTGATCATCTTTGAAAACTCTTATGTCTATCCATTTATACATTCAAGTAACAAATACAAATGTTTCATATGCTCCAAGCCATTTCTAGATGCAAATCTATTGAAAAACCACACAATTAACGAACATACTATCAAGGAAATGAAACAGGAATTAAATAATCGAGTCAGAGATAAAAATTTGAAAGTCGACGTCACGTACCTGCAATGCAAGATCTGTTTGCTCTCATTATCTAATCTGCAGAACTTGAAAACACATTTAAAGGAACACGGCAAGAAAATAGAGCTGAATTTGCAAGACAATATTATACCTTTCAAATTAGGAGGCGATAATTTCGAATGTCAAGTGTGCGGAGAAAAGTATCTCAAGCTAAGACTGCTGACTATTCATATGAGTAGACATTTCAACAACTTTAGCTGCGAGATATGCGGTTCAGTATTCATATCACTGCATTTACTAAAAAGGCATCTACAAATTCACGAATCGGGAAGTTTTCCTTGTGAAAAATGTGATAAAGTATTCAGTAATGCTGCCAAAAGGACAATGCACCACAGGGGAGTACATCTCAAGCAGTTCTCACGAAGATGTCCGATCTGTCCCGAACGATTCAACTCTAACTATCAAAGGACCAAACATTTACGTATTATACACAATCAGACAACTGGATTGTATAGATGTGACACTTGCGGGCGGGAGTACGACTTGAAATACCATCTTCTCATACATATTAGATCTGTCCATCTACAAGAGAGGAATCAGGAGTGTCCTATATGTAATTCCAGCATGCATGGGGTGCTGTGA
- Protein Sequence
- MKNLYVCFYCQKQFSDPAKLREHNTEHIFLTSSQVKYAVSKLKKYELVKVDITEIGCKLCDDLIPDFPSLKWHLLEKHKKNLDLKSGDGVLPFKVTLNDFQCALCIEKYTEFKSLNQHMNVHFQNFICEQCGTGFITPERLRTHAFSHETGSIPCENCNKLFRSTNAKNEHYATVHMKVKRHRCPHCPEAFRNYFQRNKHISNVHGVKLKEFKCTMCPKVFTISGKLGVHVRTVHLKLKRHSCEVCEWKFYSKSELKDHMVKHGGERKYQCSVCKKAYARKYTLREHMRIHENDRRFVCTICGSDTSIPDPKRRIIPLFQVAYDRSLCRPLGTLMDFSRLGQKSFKSFSSSPTRDYSPSRSPSPVYLATAPSPFINRPQTLSVQTVKQKAKKTPDIRQNALAVFEFSTVYPFVYGSNKFKCFVCSQPFLDIKELKVHMHSSHTFAPLKRLVNNRRENVLKVDVSDITCKICSERPPNLVELKRHLKEVHDKPMDLEIQDNMIPFKLELIDDAYKCVICEQNFIKVRILVIHMSEHFNNYSCEICGSVFMTLRLLKKHLEVHDSGNFPCDRCNKVFSTPYKRTLHIRGVHLKQCPRRCPMCPEKFNSNYKRTIHLQDVHNQETRVHKCKTCGRGFNLKYHLVCHIRSVHLQERNQQCDVCHQRFCNKESLKRHMVIHTGEKNHKCDVCGMAFLRRKNLKDHLRLHDIRFIQKTDSTITVKDEDGKEIILTVLKYPISLDTLEYEPQDFAVKDYDFKNKVKKKIKIKKLKKTNSKLANISLLKEPVSINNVDWKENINELENSVTFNVKTVQGFLYGPTRKRNKNVEYQTWKQNALIIFENSYVYPFIHSSNKYKCFICSKPFLDANLLKNHTINEHTIKEMKQELNNRVRDKNLKVDVTYLQCKICLLSLSNLQNLKTHLKEHGKKIELNLQDNIIPFKLGGDNFECQVCGEKYLKLRLLTIHMSRHFNNFSCEICGSVFISLHLLKRHLQIHESGSFPCEKCDKVFSNAAKRTMHHRGVHLKQFSRRCPICPERFNSNYQRTKHLRIIHNQTTGLYRCDTCGREYDLKYHLLIHIRSVHLQERNQECPICNSSMHGVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01526319;
- 90% Identity
- -
- 80% Identity
- -