Tmat019401.1
Basic Information
- Insect
- Thalpophila matura
- Gene Symbol
- lrrfip2
- Assembly
- GCA_948465475.1
- Location
- OX419180.1:18226243-18240407[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.084 1.9e+03 -1.8 0.9 25 90 37 101 33 106 0.62 2 2 5.9e-80 1.3e-75 254.8 18.7 1 259 122 381 122 392 0.91
Sequence Information
- Coding Sequence
- ATGGGACAACGCTCTGAAGTAGCCACGCCTGACAATAGTGACGAGGAGAGCGGGGATGTCTTCACGGACGCAGATTTTGGGGATTCCGATGACGAAACGATCGTCGAACGCCATGATGAGGCTAATGCTGCACACAAACCAAAATCCATTAACGAAGCTGTGAATGAGGATATTCAGAAAAATGCAGCTTCAAATGGTCACTCTAATGGAAGTGTAGATGAGCAACTCAAAATGAATGGCCGTAAGAATAGTGAAGCTCATTCAAGTGATGTAGAAACCTTAGTGTTATCGGACTTGCGCAGAGATTCACACGGCGATCAGAATCCTTCAATAGTTGGCATTCTTGGCGATCAGCAGAACCATGCGGAGCAGAGGTTAGCAGCGCGTCGGGCGGCGCGGGCCGAGGCGCGCGAGATACGCATGCGCGAGCTGGAGAGGCAGCAGCGCGAACAAGAGGACCATGCCGACAAAGCGTACGACATGTATGCTGGAAAGACACCAGAGGCGGTGGGTCGTCGTGGCGGCACGCGGCTGGCGGCGCTCAGCCCGGCCGTGCACTCGCCACGACGCAGCTCCGAGGATTCCGCTGATGACGGCTTCAGCATCAAGGACCTTAGGCACGAGTTGAAGGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGATAACGACAAGGCGGCGCTGGGCTACCAGCTGGAGCTGCTCAAGGACAGGATCGAGGAGCTGCACGAGGAGTACGCGCAGCTGCAGCGCGAGCACAAAGAAAAGTGTTCATCGTTCGAGCGTTTAAAGCGCGAACACGAAGCGGTGTCGCGCGAACTGGGCGCGGCGCGGGACGCGGTGCGCGCGCGTGACGCGGCCGCCGCCGGCGCCGGCTTCGCCTTCGTGGACGCCGCGGCCCTGGACGTCGCGCAGCGCGACACGGCGGGCGCGGCTGTGGGTGCCGTGCCCTCGCTAGCGCTCGTCACGCACGAAGCGCATCAGCTGCTCAACGACGCCGGGGAGGGCACGCTCGACGTGCGGTTGCAGAAGCTGCTGGGTTCCAAGCAGGCGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTGCAGCTCAACGACGAGCGCGCCGCCAGGCAGAACGGCGTCGCCGGACACCACGACCACGAGTACGAGAACGAGCGTGAGTAG
- Protein Sequence
- MGQRSEVATPDNSDEESGDVFTDADFGDSDDETIVERHDEANAAHKPKSINEAVNEDIQKNAASNGHSNGSVDEQLKMNGRKNSEAHSSDVETLVLSDLRRDSHGDQNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAGKTPEAVGRRGGTRLAALSPAVHSPRRSSEDSADDGFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSSFERLKREHEAVSRELGAARDAVRARDAAAAGAGFAFVDAAALDVAQRDTAGAAVGAVPSLALVTHEAHQLLNDAGEGTLDVRLQKLLGSKQALESEVRKLKLQLNDERAARQNGVAGHHDHEYENERE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -