Tmat021620.2
Basic Information
- Insect
- Thalpophila matura
- Gene Symbol
- bab1
- Assembly
- GCA_948465475.1
- Location
- OX419176.1:17525488-17536388[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-17 1.2e-14 54.1 0.0 1 43 45 88 45 90 0.95 2 2 2.8 1.2e+03 -0.4 0.3 6 15 182 191 171 193 0.80
Sequence Information
- Coding Sequence
- ATGAATACACTTGCGGCCAATAAAACAGATAGCTACCAATACCAACTTCAGTCGATGTGGCAGAAGTGCTGGAACACGCAGACGCTGGTCCACAACTTGCGATTCCGCGAGCGTGGTCCGCTCAAGTCCTGGCGACCAGAAACCATGGCTGAGGCAATCTTCTCCGTGCTAAAGGAAGGCCTGTCCTTGTCTCAGGCAGCCCGAAAATATGATATTCCCTACCCGACGTTCGTCTTGTACGCGAACAGGGTGCACAACATGCTGGGCCCCAGCGCTGACGGCGGCGCAGATTTAAGACCAAAGGGAAGGGGGCGGCCACAAAGGATCTTACTGGGCGTTTGGCCCGACGAGCACATTCGCGGCGTTATTCGCGCAGTAGTGTTCCGAGACACCCACGCGCCCTGCGCCACTCAGGCCACAAACCTTAAAGAGATCGAACTGCCGGGCTACCCTGCCATCGCACCGGACGGTGTGGCCGTTCAGAACGCTTACATCGGGTGTGGCAACGGTCGCGAGGGGCGCATGTCGCCCAACGCCGCCGCCGCCGCCGCGGTGGCTGCCGTGGCGCACGGGCTGCGTCGGCAGATGTGCAGCATGGTGGCGGGGCAGCGGCCGCCGGACCACCCGCCGCACCTGGGCCCGCCCATGCAGTCGTCGCCGCAGCTCACGTCGCCGCTCTCCACCGGGCTGGAGTCCCCGCTGTGCTCGCCCCCGCCGCCCGGCCACGCGCTCGAGCCTGCTAAGCACCCCGACCCGTTTCGCCCTTTCGCCTCACCGACTGAAATCCGCTATGGCGACCGCGACACTTCCTCTGACATCACGCTGATGGGGCCGCCGAAGAACGGCCAGGGCCACGCCAGGAAGAGCTCCGGCCAGGGCTCGTCGCCGTCCGAGCTTGACGCGGCCGAGGGGCGCGCGGACATCTGA
- Protein Sequence
- MNTLAANKTDSYQYQLQSMWQKCWNTQTLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDTHAPCATQATNLKEIELPGYPAIAPDGVAVQNAYIGCGNGREGRMSPNAAAAAAVAAVAHGLRRQMCSMVAGQRPPDHPPHLGPPMQSSPQLTSPLSTGLESPLCSPPPPGHALEPAKHPDPFRPFASPTEIRYGDRDTSSDITLMGPPKNGQGHARKSSGQGSSPSELDAAEGRADI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01425864;
- 90% Identity
- iTF_00794266;
- 80% Identity
- -