Tsim017219.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tetramorium simillimum
Gene Symbol
nfxl1
Assembly
GCA_011636635.1
Location
VBVQ01002184.1:22072-24976[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 1.1 1.4e+04 -3.3 1.1 15 19 126 130 125 130 0.81
2 16 0.49 6.5e+03 -2.2 0.7 4 10 161 167 161 167 0.92
3 16 5.6e-08 0.00074 20.0 15.1 1 18 175 191 175 192 0.98
4 16 6.2e-07 0.0082 16.7 10.1 2 18 230 245 229 246 0.92
5 16 1.5 2e+04 -3.7 1.7 6 10 271 275 271 275 0.93
6 16 6.2e-06 0.083 13.5 12.3 1 19 281 300 281 300 0.93
7 16 9.8e-05 1.3 9.7 7.5 1 18 336 353 336 354 0.97
8 16 0.0021 28 5.4 7.0 1 12 388 399 388 399 0.94
9 16 1.2 1.5e+04 -3.4 1.4 6 10 409 413 408 413 0.88
10 16 2.2e-08 0.00029 21.3 10.8 1 19 419 437 419 437 0.91
11 16 0.00011 1.4 9.6 9.8 9 19 485 495 483 495 0.90
12 16 0.0018 24 5.6 7.4 1 12 505 515 505 515 0.95
13 16 0.86 1.1e+04 -2.9 5.8 14 18 547 551 547 552 0.89
14 16 0.00031 4 8.1 6.0 1 12 588 599 578 599 0.81
15 16 0.0004 5.3 7.7 17.1 4 19 632 647 630 647 0.94
16 16 0.0025 33 5.2 14.8 1 16 692 706 692 712 0.93

Sequence Information

Coding Sequence
ATGCAGAAATTCAAGAGAGCTCAAGCACAGAATAAGCTGTCCATCGAAAGGCACTTGGAAGCCAACGCATCGTTGAACTCGTCTAGCGAGGAGGAGGATGAAACAAATGAGGAGGATGTCCAAAATGTAGTGGGCAAAATATTGTCGGAGTACCAGGGACAGAACACAGATACGGAGAAAGTGATATCGTACCTGGTTAATTCCTTTCAGACCAGTAGCGCTGTTTGCTTGATATGCATATCAACTATCAAAAAGATGGATCCAATATGGAACTGTGACAAATGCTATGCATTTCTACACATGTCCTGCATTCTACATTGGATCAACGACAGTTTGAGTTACAAACGGGCTAAAGGAATCTCCCCGATCTGGGCATGTCCAAAATGCCGTATGGAATACGATCAGGATCAGATTCCAAGATCGTACAAATGCTTCTGTAAGAAGACTGTGGATCCTCTGCATCAACCCTGGATTATTCCGCATTCTTGCGGCGAAAGCTGCGGCAAGCTTCTGCAACCAGAGTGCGGTCACAAATGCGTGTTGCTCTGCCATCCCGGTCCGTGTCCGCCTTGCGCCAAGATGGTGTCGGTTAAATGCTACTGCGGGAAGCTGCCGGCGCAGCCGCGACGTTGCAACGCCAAGAACTGGAGCTGCGGGACGGTGTGCAACAAAAAATACGAATCTTGCGCACACAGTTGCAATAGCCTGTGTCACACCGGCGAATGTCTCCCTTGCGTAGAAGTGGTATTACTGAAATGCCGCTGTAAGAGTAACGAGAAGGTGGGCAAGTGTTACGAGGGCACGTGGATCTGCGAGAAACCCTGCAACAGGAGATTCTCCTGCAACGTGCACAGCTGCGAGAGCACTTGTCACCTACCCGGCGACTGTGGCAGCTGTCCCCTGGAGAAGAACAGAACCTGTCCCTGCGGGAAGAAACGATACGACGTTTCCTGCAGGCGGCAGCAGGTGCCAACGTGCGGCGACACGTGCGGCAAATTACTCGACTGCGGCTCGCACTTCTGCAACATGCGATGCCACGCCGACCGGTGCGGCCAGTGCCTGGAGGTCGTGACGAAGGCGTGCAGATGCGGCAGCTACACGAAGGAGATCGCCTGTGCGAAGGAGTTCCACTGCAACAAGAAGTGCATGCAGATGCGCCTGTGCGGCAGACACATGTGCAACAGGAAATGCTGCGACTGCGTCGCGAAGAACACGTCGAATCCTTGCGAGAAGACGTGCGAGAACACGCTCAACTGCCGTAAGCACAAGTGCGCCGCGCTCTGCCACAGCGGCCCCTGCTATCCGTGCACCCGAACGGACGTCATACAGTGCCGATGCGGCGGCAGCAAGATAACAGTGCCGTGCGGCACCAGGAAGAGGATCAAGCCGCCACCGTGCAACAAGTCCTGCAAGATTCCGCCCATCTGCCATCACAGCAAGAGGGAGACGCACAAGTGTCATCAGGGCCCGTGTCCACCGTGTAAGAAGATCTGCGGACTGACGCACAAGAGATGCGGCCACTCTTGCCCGGCCACTTGCCACACCAAGGTCTGGGTGAAGAGCCGGACGAACGGCATGAAGGCGCAGCCGGTTGGACCCTGGGAGAGACCAAAGGACGTCATGGAACTGAAGACCTTGCCGTGTCCACCGTGCGAGGTCTCCGTGCCCGTCACCTGCCTCGGTGGTCACGAGACGCGCCCTTGGCCGTGCCACATGTCGAAATCCAGCTCCTGCGGCAGACCCTGCGGCCAGCTACTACCGTGCAGGAATCACACCTGCGAGCTGACCTGCCACAAGCTACAGACCGCCGACGACGAGTCCAACAGTGGTATCGCGCGGCCCTGCTTGGAGTGCGACAAGGAATGCAGCTTCGCACGACCGTCAGGCTGCCCGCACACGTGCCTGCAGCCTTGTCATCCAGCGCCGTGTAAACCGTGCAAGCAACTGGTGCGAATCTCTTGTCACTGCGGTATTAGCACCCTGTACCGGCATTGCGTAAACCTGACATCTGCAACGAGCAAGGAACGAGACGAATTACTCAAATGTGGAAACCAGTGCCCAAAAAATTATCCGTGCGGCCACCGTTGCGTCAATGATTGTCATCCAGGAGAGTGCAAGGGTGGAGAGGGATGCAGCAAGAAAGTTAGATTATGGTGTAAATGTAAACGGATCAAGAAGGATTTTCTCTGTTCATTTCTGCAAAAGGAGCAGATTACAGTAGACTGCGATAGCGTGTGCAAGTCATTgaagaatgagaaaaaagaagccCAGAAAGCTATGATAGCGAAGAAACTGGAAGAGGAGGAACTACGCAATCGGGAAGAAATCGAGAAGTTTGAGAAGAAATTTAAGCCACGACGGAAAAGGAAGGACAAATATGATAGCTCGAAACAATCCCAAGAAAACATAAAGAATAAGTATCGCAACGCATGGATTTTAGCAATTATCGTGAGCATTATAGGGATAATAGCGTATATGATCATTCCTGACTTGAGTATATCTGGATTGAGCTGA
Protein Sequence
MQKFKRAQAQNKLSIERHLEANASLNSSSEEEDETNEEDVQNVVGKILSEYQGQNTDTEKVISYLVNSFQTSSAVCLICISTIKKMDPIWNCDKCYAFLHMSCILHWINDSLSYKRAKGISPIWACPKCRMEYDQDQIPRSYKCFCKKTVDPLHQPWIIPHSCGESCGKLLQPECGHKCVLLCHPGPCPPCAKMVSVKCYCGKLPAQPRRCNAKNWSCGTVCNKKYESCAHSCNSLCHTGECLPCVEVVLLKCRCKSNEKVGKCYEGTWICEKPCNRRFSCNVHSCESTCHLPGDCGSCPLEKNRTCPCGKKRYDVSCRRQQVPTCGDTCGKLLDCGSHFCNMRCHADRCGQCLEVVTKACRCGSYTKEIACAKEFHCNKKCMQMRLCGRHMCNRKCCDCVAKNTSNPCEKTCENTLNCRKHKCAALCHSGPCYPCTRTDVIQCRCGGSKITVPCGTRKRIKPPPCNKSCKIPPICHHSKRETHKCHQGPCPPCKKICGLTHKRCGHSCPATCHTKVWVKSRTNGMKAQPVGPWERPKDVMELKTLPCPPCEVSVPVTCLGGHETRPWPCHMSKSSSCGRPCGQLLPCRNHTCELTCHKLQTADDESNSGIARPCLECDKECSFARPSGCPHTCLQPCHPAPCKPCKQLVRISCHCGISTLYRHCVNLTSATSKERDELLKCGNQCPKNYPCGHRCVNDCHPGECKGGEGCSKKVRLWCKCKRIKKDFLCSFLQKEQITVDCDSVCKSLKNEKKEAQKAMIAKKLEEEELRNREEIEKFEKKFKPRRKRKDKYDSSKQSQENIKNKYRNAWILAIIVSIIGIIAYMIIPDLSISGLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01476621;
90% Identity
iTF_01423331;
80% Identity
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