Tsim002684.1
Basic Information
- Insect
- Tetramorium simillimum
- Gene Symbol
- -
- Assembly
- GCA_011636635.1
- Location
- VBVQ01000551.1:49220-52056[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.3 2.7e+02 2.9 0.3 1 8 107 114 107 117 0.91 2 15 0.097 11 7.2 1.1 2 23 401 422 400 422 0.96 3 15 0.0033 0.39 11.8 0.2 1 23 430 453 430 453 0.95 4 15 8e-06 0.00094 20.0 1.6 1 23 459 483 459 483 0.93 5 15 0.002 0.24 12.5 0.4 1 23 587 610 587 610 0.92 6 15 0.0001 0.012 16.5 1.7 1 23 616 638 616 638 0.97 7 15 0.19 23 6.2 4.9 1 23 644 666 644 666 0.98 8 15 1.7e-06 0.0002 22.2 1.8 1 23 671 693 671 693 0.97 9 15 0.0093 1.1 10.4 2.6 1 23 706 729 706 729 0.95 10 15 0.00012 0.014 16.4 4.3 1 23 745 768 745 768 0.96 11 15 0.0026 0.31 12.1 0.5 1 23 778 801 778 801 0.98 12 15 0.00084 0.099 13.7 1.1 1 23 807 829 807 829 0.96 13 15 0.0055 0.65 11.1 2.1 1 23 835 857 835 857 0.90 14 15 3.8e-05 0.0045 17.9 3.7 1 23 863 886 863 886 0.98 15 15 0.44 52 5.1 0.4 2 23 892 913 891 913 0.96
Sequence Information
- Coding Sequence
- aTGACAGAGATGGAAGAAAATACGTGCCGTCTGTGCGGTGTTAAAACTGAATCTGAATATTCAAAGTATATCTTTGATGAAATAACTAATTTTGCACagataataaatgaaactttaCCAATTAAGgtctCAGAAGATGATCATTccaaatatatatgtctagactgttataataaagttatcagtcattatgattttattcaaAGTGTATTGGCGTACACGAAGGAAAGTGAGACAAACATCGTTTCTTTCTTCGAAGTCAATAGAAATGAGAAATTGGAAAACGTGATAATTTCTAAACTGAACAGTGATATGATATATACCTGTCCGAATTGCAACAAAGATGTAATActctttataaagaataattctgAAGATAATGATTGCGCTTTTGAGATTTCATTGGCTGCTGTGGATCAAATAAGAGAATCGATGGGAGAAAGTAGCCAAATAACTGAAGACATAATCGAGAttgttaatatcaataaatcaGATAAATCGTTAAACAAATTACATGAATTATCACCGAATTGTGACGTCATTGACAggaatataacaaataataacaaagaggacattaatggaatatatataaattcgcaAGAAGACACCAACCATACAAATTGTTACTTtacattggaaaatattaatgtatcatATGAATCGAATAAAggtataaagagaaaatttcaagaaagtgCTTCTAGTAAAGCATCTGTTAACTCTATTAAGTTGCAAAAACTAGAAGAAAGATCAGATGTAATGGAACAAGATGCCAATGAATTGAACAATGATTACGATACGTCAAGTGTGACAGATTTGATAACATTTCAGTCAATAAACAACAGCATAGAATGTcccaataatgaaaatatagaagatCAAGAGGAAAATAATGCGGAATATATGGTGGAAAGGGAGCACAGCGACAAGAATCTTATTAAATCACAAACGTTAGAAATAAAgtcagatataaaaaaacaaaatgaatcGGACAGTGATTATGATAGATCAAGTATTGCTGGCCTGATAACATTCCAACCAGAAAACAATGATGACGATGGCATCGCATATGTCAGTGGTGATACAGAAATTGAAGATGATATTACAATAGACGAAAtggtaaaaatagaagaagaaTGCGTCAATGATAAAGATGAAACAAATGACACTGACATTCcaaaaagtaatgaaaaacaGGTGTGTAATTTGTGTGGAGCTTGTTATATTTCACAGGTGAAGTACCAGTTTCATATGGAGagacataaattaaacaaaatagataaatatgtcTGTTTAATATGTGACAAAGAAAccaaaaatgaaaacttaTTGTGGGATCATTACCTCTACATGCACAAGAACACAACGCGGTACATTTGCCTAGACTGCAACAGAACATTCACGAGAAAACCATATTTGAATGTGCATCAAAGAAGACAGAGACACACTGGTTACAAGAAAACGCTAAAAGTTGATACGGATGAGGACAACAATCAGACGCAcaacgatattaaaaaattaaaaaagcgaAAATGCACTGTTTGCAGAAAATTGATAAGAGATGTGGATCCCAATGCTATCAGCGATGTAAGAATATGCGCCTCCTGTGAAGAGTCCAGTGGATTTCTGATAGTCAACGGggaagcaaaaataatatcacagCGACAGTATCACTGTTTGAAGTGCCGCAAGCACTTTATGCGCCGGGAAAGACTCGAGTTCCATGAAATGCGACATAATGAGAATATGGACGAGTTTATCTGCAGCACATGCGGTAAGGAGTTCAGCGGGGAAAATTCTTTGTACGAGCATTATCTTTTCGTGCACAAAGGGGCTAGACCGCATATCTGCGACGTGTGCGGCAAGTCGTTTCAACTGAAGGCGCGATTAAAGGAACACCTTCGGAAGCATACGGGTGAGTTGCCTTATCAATGTGAAATATGCGGCCTGCGTTGTATGACCACCCACGCACTGAAATTCCACAAGAGATCTCACTTTTCCACTCGCCACACTTGTGAGATATGTGACAAGTCGTTCATCAAGAAGCAGAATTTGAATGAACATATAGAGAAGCACTGGAAGAAAGACAAGAACGTATCACTTCCGCAAATATTCACGTGTCCCATCTGCAACTGCGAGCTGCCAACTTTCCGTATGCTGAAACATCACATGCTTGGAACCCATCAGCTCGAGCGTTACGATCCCTTGATAACGAAACAAAAACCATTGTACGAATGTAACGAGTGTCACGAGAAGTTCAAACATCAAATGTCGCTCAAGGCGCACAAGGAGAAGGTGCACGAGGGTAAAGGTATGCCGCCTCGTACATTTCAGTGTGATGTATGCAAAGCGGAATACAAAGCCAAACAGATGCTAATAAATCACATTAAGAGCAAGCACAGCAGTGAGAAACAGTACGCGTGTGCGCAATGCAATAAGAAATTCGCGGATGTTAAAACGCTCTACCATCACATCTTACTACATACTAATAAAAAGCCGTTCACCTGCGAGTACTGCGACATGAGCTTCAAGCGAAAAGACATCAGAGATATTCATCGCCGTAAACACACGAACGCTCGACCTTACCAGTGCACAGATTGCAACAAGTCATTCAGTAGCTACTCCAGTCGCTCAAACCATCGCAAGAAGGAACATGGGGATAATGAAACTGAATGTCCGGAATGCAAAGCGAAATGCGGTGATATACAGGAAATCAGAATTCATCTCAACAAACATCTCGGTGAAAAGTTGAGTAAATTAGAATCCACCTAA
- Protein Sequence
- MTEMEENTCRLCGVKTESEYSKYIFDEITNFAQIINETLPIKVSEDDHSKYICLDCYNKVISHYDFIQSVLAYTKESETNIVSFFEVNRNEKLENVIISKLNSDMIYTCPNCNKDVILFIKNNSEDNDCAFEISLAAVDQIRESMGESSQITEDIIEIVNINKSDKSLNKLHELSPNCDVIDRNITNNNKEDINGIYINSQEDTNHTNCYFTLENINVSYESNKGIKRKFQESASSKASVNSIKLQKLEERSDVMEQDANELNNDYDTSSVTDLITFQSINNSIECPNNENIEDQEENNAEYMVEREHSDKNLIKSQTLEIKSDIKKQNESDSDYDRSSIAGLITFQPENNDDDGIAYVSGDTEIEDDITIDEMVKIEEECVNDKDETNDTDIPKSNEKQVCNLCGACYISQVKYQFHMERHKLNKIDKYVCLICDKETKNENLLWDHYLYMHKNTTRYICLDCNRTFTRKPYLNVHQRRQRHTGYKKTLKVDTDEDNNQTHNDIKKLKKRKCTVCRKLIRDVDPNAISDVRICASCEESSGFLIVNGEAKIISQRQYHCLKCRKHFMRRERLEFHEMRHNENMDEFICSTCGKEFSGENSLYEHYLFVHKGARPHICDVCGKSFQLKARLKEHLRKHTGELPYQCEICGLRCMTTHALKFHKRSHFSTRHTCEICDKSFIKKQNLNEHIEKHWKKDKNVSLPQIFTCPICNCELPTFRMLKHHMLGTHQLERYDPLITKQKPLYECNECHEKFKHQMSLKAHKEKVHEGKGMPPRTFQCDVCKAEYKAKQMLINHIKSKHSSEKQYACAQCNKKFADVKTLYHHILLHTNKKPFTCEYCDMSFKRKDIRDIHRRKHTNARPYQCTDCNKSFSSYSSRSNHRKKEHGDNETECPECKAKCGDIQEIRIHLNKHLGEKLSKLEST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01421764;
- 90% Identity
- iTF_01422438;
- 80% Identity
- -