Timm016545.1
Basic Information
- Insect
- Tetramorium immigrans
- Gene Symbol
- -
- Assembly
- GCA_011636585.1
- Location
- VBVO01000392.1:24060-26876[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.2 2.7e+02 2.9 0.3 1 8 107 114 107 117 0.91 2 15 0.11 13 7.0 1.4 2 23 396 417 395 417 0.96 3 15 0.0031 0.38 11.9 0.1 1 23 425 448 425 448 0.95 4 15 4.9e-05 0.0061 17.5 1.4 1 23 454 478 454 478 0.92 5 15 0.002 0.24 12.5 0.4 1 23 581 604 581 604 0.92 6 15 0.0001 0.013 16.5 1.7 1 23 610 632 610 632 0.97 7 15 0.12 15 6.8 5.4 1 23 638 660 638 660 0.98 8 15 4.4e-06 0.00055 20.8 2.0 1 23 665 687 665 687 0.97 9 15 0.0054 0.68 11.1 1.9 1 23 700 723 700 723 0.95 10 15 2.1e-05 0.0027 18.7 3.1 1 23 739 761 739 761 0.98 11 15 0.0025 0.31 12.1 0.5 1 23 771 794 771 794 0.98 12 15 8.2e-05 0.01 16.8 0.4 1 23 800 822 800 822 0.97 13 15 0.012 1.6 9.9 2.4 1 23 828 850 828 850 0.90 14 15 2.8e-05 0.0035 18.3 3.3 1 23 856 879 856 879 0.98 15 15 0.35 44 5.4 0.2 2 23 885 906 884 906 0.96
Sequence Information
- Coding Sequence
- atGATAGAGATGGAAGTAAATACGTGTCGTCTGTGTGGTATGAAAACTGAATctgaatatttaaagtatatctTTGATGAAATAACTAATTTTGCACagataataaatgaaactttaCCAATTAAGgTCTCACAAGATGATCATTCCAAATATATATGTCTAGActgttataataaagttatcagtcattatgattttattcaaAGTGTATTGGCATACACGAAGGAAAGTGAGACAAACATCGCTTCTTTCTTCGAAGTCaatagaaatgagaaattggaaaatgtgataatttctaaattgaaCAATGATATGATATATACTTGTCCGAATTGCAACAAAGatgtaatacttttaataaagaataattctgGAGATAATGATTGCACGTTTGAGATTTCATTGGCTGCTGTGGATCAAATAAAAGAATCGATGGGAGAAAATAGCCAAATATCTGAAGATATAATGGAGTTGGTtaatatcaatcaatcaaAGACAGTAAACGAATTACATGAATTATCACCGAATTGTGATATCGTTGACAGAAATATGACAAATAATAACAAAGGGGATAttaatggaatatatataagtttgcAAGAAGATACCAACCATATGAATTCTTATATTacattggaaaatattaatgtatcacATGAATTGAATAAAggtataaagagaaaatttcaagaaagtaAAACATCTATTAACTCTATTAAGGTGCAAAAACTAGACGAAAGGTTAGATGTAATGGAACAAGATGCCAATGAATTGAACAATGATTACGATACATCAAGTGTAACTGATTTGATAACATTTCAGTCAATAAACAATAGCATAGAATCTCCCAGTGAAAATATAGAAGTTCAAGAGGAAAATAATATGGAATATATGGTGGAAATGGAGCACAGTGACAAGAATCTTATTAAATcacaaatattagaaataaagtcagatacaaagaaacaaaaagaaaatgaatcgGACAGTGATTATGATAGATCAAGTATTGCTGGCCTGATAATATACCAACCAGAAAACAATGATGATGATGGCATGGAATATGTCAGTGGTGATACAGAAATTGAAGATGGCAATACAATAGACGATATGACGAAAATAAACGAATGCGTCAATAAAGATGATACAAATGATACTGACATTccaaaaagtaatgaaaaacaGGTGTGTAAGTTGTGCGGAGCTTGTTATATTTCACAGGTAAAGTACCAGTTTCATATGGAGAgacataaattaaacaaaatagataaatatgtcTGTTTAATATGTGACAAAGAAACCAAAAATGAAAACTTATTGTGGGATCATTATCTCTACATACACAAGAACACAACGCGGTATATTTGCTTAGACTGCAACAGAGCATTCACGAGAAAACCATATTTGAATATGCATCAGAAAAGACAGAGACACACTGGTTACAAAAAAACGCTAAAAGTTGATACAAATGAAGATAATAATCAGACGCAgaacgatattaaaaaattaaagcgaAAATGCACTGTTTGCAGAAAATTGATAAGAGATGTAGATCCCAATGCTATCAACGATCTAAGAATGTGCGCCTCTTGTGAAGAGTCCAATGGATTTCTGATAGTCAACGgggaagtaaaaataatatcacagCGACAGTATCACTGTTTGAAGTGCCGAAAGCACTTTATGCGCCGGGAAAGACTCGAGTTCCATGAAATGCGACATAATGAGAATATGGACGAGTTTATCTGCAGCACATGCGGTAAGGAGTTCAGCGGAGAAAATTCTTTGTACGAGCATTATCTTTTCGTGCACAAAGGGGCTAGACCGCATATCTGCGACGTGTGCGGCAAGTCGTTTCAACTGAAGGCACGATTGAAGGAACACCTTCGGAAGCATACGGGTGAGTTGCCTTATCAATGTGAAATATGCGGCCAGCGTTGTATGACTACCCACGCACTGAAATTCCACAAGAGGTCTCATTTTTCCACTCGCCACAGTTGTGAGATATGTGACAAATCGTTCATCAAGAAACAGAATTTGAATGAACATCTAGAGAAGCATTGGAAGAAAGACAAGAACATATCACTTTCGCAAATATTCACGTGTCCCATCTGCAACTGCGAGCTGCCAACTTTCCGTATGCTAAAACATCACATGCTTGGAATCCATCAGCTCGAGCGTCATGATCCCTTAATAACGAAACAAAAACCATTGTACGAATGTAACGAGTGTCAGGAGAAGTTCAAACATCAAATGTCGCTCAAGGCGCACAAGAAGGTGCACGAGGGTAAAGGTATGCCTCCTCGTACATTTCAGTGTGACGTATGCAAAGCGGAATACAAAGCCAAACAGATGCTAATAAATCACATTAAGAGCAAGCACAGCAATGAGAAACAGTACGAGTGTGCGCAATGCAACAAGAGATTCGCGGATGTTAAAACGCTGTACCGTCACATTTTACTACATACTAATAGAAAGCCGTTCACCTGCGAGTACTGCAACATGAGCTTCAAGCGAAAAGAGATCAGAGATGTTCATCGCCGTAAACACACAAACGATCGACCTTACCAGTGCACAGATTGCAACAAGTCATTCAGTAGCTATTCCAGTCGCTCAAACCATCGCAAGAAGGCACATGGGGATAATGAAATTGAATGTCCGGAATGCAAAGCGAAATGCGGTGATATACAGGAAATCAGAATTCATCTCAACAAACATCTCGGTGAAAAATTGAGTAAATTAGAATCcaagtaa
- Protein Sequence
- MIEMEVNTCRLCGMKTESEYLKYIFDEITNFAQIINETLPIKVSQDDHSKYICLDCYNKVISHYDFIQSVLAYTKESETNIASFFEVNRNEKLENVIISKLNNDMIYTCPNCNKDVILLIKNNSGDNDCTFEISLAAVDQIKESMGENSQISEDIMELVNINQSKTVNELHELSPNCDIVDRNMTNNNKGDINGIYISLQEDTNHMNSYITLENINVSHELNKGIKRKFQESKTSINSIKVQKLDERLDVMEQDANELNNDYDTSSVTDLITFQSINNSIESPSENIEVQEENNMEYMVEMEHSDKNLIKSQILEIKSDTKKQKENESDSDYDRSSIAGLIIYQPENNDDDGMEYVSGDTEIEDGNTIDDMTKINECVNKDDTNDTDIPKSNEKQVCKLCGACYISQVKYQFHMERHKLNKIDKYVCLICDKETKNENLLWDHYLYIHKNTTRYICLDCNRAFTRKPYLNMHQKRQRHTGYKKTLKVDTNEDNNQTQNDIKKLKRKCTVCRKLIRDVDPNAINDLRMCASCEESNGFLIVNGEVKIISQRQYHCLKCRKHFMRRERLEFHEMRHNENMDEFICSTCGKEFSGENSLYEHYLFVHKGARPHICDVCGKSFQLKARLKEHLRKHTGELPYQCEICGQRCMTTHALKFHKRSHFSTRHSCEICDKSFIKKQNLNEHLEKHWKKDKNISLSQIFTCPICNCELPTFRMLKHHMLGIHQLERHDPLITKQKPLYECNECQEKFKHQMSLKAHKKVHEGKGMPPRTFQCDVCKAEYKAKQMLINHIKSKHSNEKQYECAQCNKRFADVKTLYRHILLHTNRKPFTCEYCNMSFKRKEIRDVHRRKHTNDRPYQCTDCNKSFSSYSSRSNHRKKAHGDNEIECPECKAKCGDIQEIRIHLNKHLGEKLSKLESK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01421764;
- 90% Identity
- iTF_01421764; iTF_01423888;
- 80% Identity
- -