Tsim016444.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tetramorium simillimum
Gene Symbol
-
Assembly
GCA_011636635.1
Location
VBVQ01004082.1:3411-12846[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 32 6.8e-06 0.0008 20.3 1.0 1 23 209 231 209 231 0.98
2 32 0.0098 1.2 10.3 3.7 1 23 254 277 254 277 0.96
3 32 0.00066 0.078 14.0 0.5 2 23 284 306 283 306 0.96
4 32 0.032 3.8 8.7 0.1 1 21 326 346 326 347 0.95
5 32 0.0034 0.4 11.8 0.2 2 23 445 466 444 466 0.95
6 32 0.0068 0.8 10.8 0.5 2 23 473 495 472 495 0.91
7 32 0.0002 0.024 15.6 0.2 1 23 564 587 564 587 0.96
8 32 0.054 6.4 8.0 2.5 1 23 593 616 593 616 0.95
9 32 0.13 15 6.8 1.5 1 23 629 651 629 651 0.97
10 32 3.7e-05 0.0044 17.9 0.9 3 23 696 717 695 717 0.96
11 32 3.2 3.7e+02 2.4 0.4 1 23 749 772 749 772 0.92
12 32 0.005 0.59 11.2 0.8 2 23 779 802 778 802 0.94
13 32 0.97 1.1e+02 4.0 0.0 2 23 811 833 811 833 0.90
14 32 0.028 3.3 8.9 0.0 2 23 840 862 839 862 0.93
15 32 9.7e-05 0.011 16.6 3.2 1 23 870 892 870 892 0.97
16 32 0.02 2.3 9.4 0.8 2 23 928 951 927 951 0.94
17 32 0.00023 0.027 15.5 3.3 1 23 954 977 954 977 0.97
18 32 0.00074 0.088 13.8 0.1 2 23 984 1006 983 1006 0.96
19 32 0.00099 0.12 13.5 3.9 1 21 1033 1053 1033 1054 0.95
20 32 0.0029 0.34 12.0 1.8 2 23 1068 1089 1067 1090 0.93
21 32 0.39 46 5.3 1.1 1 23 1093 1116 1093 1116 0.94
22 32 0.028 3.4 8.9 2.1 2 23 1123 1146 1122 1146 0.90
23 32 3.3 3.9e+02 2.4 0.2 2 23 1154 1176 1154 1176 0.94
24 32 1.5 1.8e+02 3.4 0.0 2 23 1183 1205 1182 1205 0.91
25 32 0.24 29 5.9 2.7 2 23 1214 1236 1214 1236 0.96
26 32 0.75 88 4.4 0.5 2 23 1242 1264 1241 1264 0.91
27 32 0.018 2.1 9.5 0.1 1 23 1330 1353 1330 1353 0.95
28 32 0.00028 0.033 15.2 1.3 1 21 1380 1400 1380 1401 0.95
29 32 0.35 41 5.5 1.9 2 23 1502 1524 1501 1524 0.94
30 32 0.99 1.2e+02 4.0 0.4 2 23 1531 1553 1530 1553 0.94
31 32 0.75 88 4.4 2.5 1 23 1564 1586 1564 1586 0.97
32 32 0.012 1.4 10.0 0.2 1 20 1590 1609 1590 1611 0.94

Sequence Information

Coding Sequence
ATGCACATTTTCGGCCAGGAAGGCAAGAATCGTCAGCTCGTCGACAAGATTCAGACGTGCTTGCCGTTCAAGATAATAGAAGATGATTGTTTGCCAAAAGTCCTGTGTTATCGATGCATGTACAACTTGGAAAATTTCTATGACTTTAGGACTGCGTGTGTTAACGCAGCTGCTTGGTTGGAAAGAAATAGACCAAAGGAAGGCGCGAGCGATGACGGCGCAAATGACAGCGCACAATCCGGGGAGATGCACGCGGAGCTTCTtaaaggaaaggaaaatatGCCAGTACTTATTCCGGAAGCACCCGTAGTCAATCCTAATGCGGCATTAGGTACACCCCCGAGATTAAATTCGGACGGTGAAGCAGATCCCGAGATTGAGGAGATTCTTGACACAAGTGAAGGTACGGATGAAGCTACAGTAATCGACGATTCGGAAGATCGACGATCGGAATATGAGATGGCATATGAGATGGACATGGAGACGAATCCTAGCGACTTTTTGGAAATGACTCCAATGGTAACTGAAGAAAATGAAGAGGAGTGCGGTATGAACAATACGAACGCCGCCGCGACCACTCAAGATACCGCGGTCTTTTCACATACGTCGCAACAACATGAAGTCTACGTCTGTTCTCTCTGCAACAAAGCGTTCAGTTCCAAAGGTCACTTATCCCTGCACGCGAGAATTCACGTAGGTGAGGGTGATGTGATTGGCGAAAGAGTAATCACCGACGACCATACTTCGTACCAACGACCGTATCAATGTGATCTTTGTCATAAATCGTATTCCACTGCGAAACACCGCTGGGGACACGTTTCTACGACACATCGGGGACATCCTGCAGTAACGTGTGCATATTGTTCTCGCATATACTCGACGCGATATAATCTCGATGAGCATATAAAATCGCGACACGCTGGTCTACCGCCACCTCCAGAATTATCGGTTCCCCTTTCGCGCACGGAAACTCGTTATCAGTGCCAAACATGTCTGATGGTGTATACGGATCTAGCAGATTTCACGGCGCATCGGCAGATATGCATCCAAGAGCAACGTACAGATCTGTTGGGGCAAACTGAAGCGCAAAACAGTAAGATTTTCGCCGACACGTCCGATATCTCGAGCGTAGATTCGGATGACGAGAACAAAGACTTCAAGAACGCCGAGGCTAAATTGGCGAAAAATCCACAATTAACTATATTGAAACAAGCTCTGACTAAAGGAGACAgtttaaaacgaaattttgaCGATGATGGCTCGACATCCAGCGGCAAGccgaaaaaaatagttaagtcagAAGAGGGTGAGACGAATCCTCAGAAGAGATGGTATTGTGAATCTTGTCCACAAAGTTTTACATCGGTGGATAGTTTGAAAGAACATGAGATTAGGCATGATGCCGAAAAGCCATTTATTTGCATACTATGCAAGAAAGATTTCGTTTTGAAATCTTCATTAATTAGGCACATTACAACGTCACATGGCGTTGATCCTACTCCTATCGTTGACAGTGAAAAGTATCTAAAGGCAACAGTAATGCCTCAGAATTGGAACGATCGGGTGGACAcggttttcgaaaaaattgaaattaaggAATCACCGGAGCTTTCATCGTCACCCGAgataaatttagaaaatgatgACAAAGATTACAAGAATCACGAGAATATAGAAATCGAAACGGTATTTGTATGTGAGACTTGTAAGAGAGATTTCAATGACCGAGCGTCATTATGGTTACATATACGAGCGATGCATAAAGAATATGCAGCATTTACCTGTGGAGTGTGTTTAAAGATGTGCTTTGATAACACGCAACTTCAAAATCATGTCTACATGTATCACGGAAGATCTAAGCTTTTAATATCGGAACAAAGAAGGTACAGTTGTACGATCTGCGGTAGACAGCATGACTCGAGGAAGAAGCTAATCACTCATGTCTCGATACATAATGTCGATCCTGCCTATGATCCTGCGAGttttgtacaattaaatagtaattattacaatgaaaaCTTGAATGGAAATGAAGGAAATGAACAAGTATTAGATTTTGACGGAGAAGATGGTGAAAAGGTCGATTGTTACATTTGTTACAAATCTTTTCCGACTGAGGACCATCTGATACGACATCAGAGAAATGCTCATAAGTCTGACCAGATAGTTTCATTAGATGCTACGGGTAGTGGCAATACTCTTAGTGTCAATGGTAATGGTAATAGAGCGCAGTATCATTTATTCTTTGTTTGCGAGGTATGTGGCAGTTCACATTCGAGTAAATGGGAACGCTGGTTGCATATCAACAATACACACAACAACGAATCTTCTATTAAATGTGAATGGGAGAATTGCGGAAAGATATTCGCGACGAAATCGTTGCGCAATGAGCATCTTCAGCATCACGCGGTACAAGGACCCTCGCCGAATACCTGCGAGATATGTGGGAAATTGTGGCCTACTCGCGTCGATTATTGGAAGCACGTGATGGGCGTGCACGCAGACACAGTGCCTCTGATTTGCGGCGTTTGTCTGAAAGTATTTTCCGACGTAATGCAATTGAGCGCACACGTGAAGGCGAAACATTGGCCGCTGACCAGTGGTGATTTCTGTTGTGATATCTGCGGTAGACCGTACTCCAACAAGTCCAAGATGTCCCGGCATCGAAAGATCCATGGCTTGGAGGTTATTGACGCTGTGTGCGATAATAGCAGTTTCAATGAAACGACTAATGAATCGGTTAAACCTGATCACAACAATGGCGCGTCAGAAATAGAATTGAGTTGTGACCAGTGCCCGGAACTCAGCTTCACCACCCTGGACAGCTTGTGTAATCATCGACGGATAGCACACAATCTTTTCCCGTGCGACTTGTGCAACAAATGTTACGGGAGAACGTCGCACTTGTGGAAGCATGTGAATCGGGTGCACAAGGGACACGCGGATGTGACCTGTCCCTACTGCGCCAAGACAAGTGCGTCAAGAGATCATCTGGCAGCGCATATCGCCAAGATTCATAGGTATCTGCCAGCAATGGGTAAGGATAATCAGAACTGTGTCGCTTCCAAGTCGCTAAGTGTCGAGGACGATGTCTTGCATTATTGCGAGAAATGTAACAAGGGATTCCACAAGCGCTATTTGCTCCGTCGTCACATGAAAGGTTGTCAAAACTATCGTAAAGATCCTGGTGCATTGTTGACTCGTTGCCGGGCCTGCGAGAGGATATTCAAGGATCGTGCGAGCCTGCAGAAGCACATTGAGAATCATCATAGCACATATACTTGCCACTTGTGTAACGAAACGATCACTTCCAAGCTAGGTATCATGACACACAACCGCGTCAATCATATGGATCATCCGGACTTGACGTGCGACCATCCAAGTTGTAAAAAACTCTTCCGTACTAAAGAAGATTTAGAATCTCATCGAAAGGATCACAAGTATCATAGCAACCCGAACGTTTGTGACTTCTGCGGTGACACCGTGGAAAATAAGCTGAAACTGAAGATGCACGTATTATCGTTGCATCGTAACGAGATCGGCGTCTCCTGCGGTGTTTGCCTCATTCCCATGAAGGACCCCAAAGATTTGAAGAAGCACGTCGAGTCGGAGCACAGCAGCGTTCTTTCCAATCCAAACACGTGTCAGGTGTGCGGCAAGCAATATGCATCCAAGTGGAAGGCCTTTGATCACACGAAGAAATGTCACGGCAAGGTCTTCCTCACGTGCAAACAGTGTCTAGCGGTTTTCACGGATGAAAACGATATCCGCGATCATTACGAACACGTGCACAACGTTCCAAAGGATCAATTAGCCGTTTTTGAATATAGAATGGATATTGGGGCAAAGAGAGAAGGTTACGAGACTCCCGATATTATTCAAGGAGTATATGTCAAGGAGGAACCGGATGACATGGAATTCGACGAGGAGATATGTGACGAGAGTTCAAACGACTCTCGTAAACGTAGAAGATCGCCAAACGACACGTACGATTGCGAGATGTGTCCCGAGATCTTTCTCAATTCGGACACTCTCGCCAAGCATTATCAGAATGTCCATAACACCGACCCCGTCCGTATgttcaagaaatttaaaaaggatAGTGACAGCAAACGCAAGATGAGAAATAGAAACAACTTTGAGTGTAAGAATTGCAAGAAGCAGTTCTCTACCAAGACCCTATTCTGGAATCACATCAATTTATGTACACGGCGAAACTCGATAGGTAGATTTGACATGCCGAATAATGTCCCGACGTCAATTCTGGAGTCCCATCTGAAAAACAATAATCAGATTCCACGAGAAGAATCGCTACCGCTGACGAACGAATCCAACTTGAACATTCCCGATTTCAATCTATTCGAAGACATTAATATGCAATTGTCGGCCCAGAAACCTGTGCCGAATCTTATGCCGTTATCGCAGATGAAGGCGACGGGTAACGGCAAGTGCTCGAGAAAAGACTCGCGCAAGGTGTACGACGAGTCGACCAATACCGAGTGCACGTGCGAAGTCTGCGGTAAGCAATGGCCCGCCAAGAAACATTTGTGGCAACACCTGATTCGTTTCCATCGCGCCGAAGCTGCCGTTACGTGTGGCGTATGCTTGAAGCTATGTAAATCGTATCAAGATCTGGCCGACCATTTGAAGGCCGAGCATGCCCCTGTCTTGTCGCCAGAGGGCAACAATTTTACTTGTAAGACATGCGGTAGATACCACAACGCGAGAAGCAAACTGTTGTTGCATATGAGCATTCATATCGGGAACTTCCAGTGTCAAAAGTGCCAGCAAGGTTTCGCGAGCGAGGAGAAACTCAACGAGCACGTAACGAGCTGCAATGGTAAGGAGTTTGATGATCACGCGGTGGCGGACGAAGATAATGCAAAGAACGACAACGACGAGAAGGGCAGCTTGATCGCCGACGAAACGTCGGTCATCGAGGAAGCGGAGGAAGCGGATTTCGAGTCGGAAGGTGAAGAGAGTAGAGATATCCATGAAGACAATTCGGAAAATAGCGAAGGAGACAATTCGGAAAATAGCGATGATTCGGATAGCGACAGTAATAGCAGTTCAAGCGAGGACGAGAACGAAAACgaagaaggagaggaagaggaagaggaaaacgAAAACGAAAACGACAACGAAAATGAGTCTGATACAAGAACTACTAGTAGAGAGACTGGTGATAGTGTATCGTGTAATTCCGAGAGCGACGACGATGAATCGGATATGGATGAAACAGAAGTGATGGAAAAGAAAACGCTACAGTTGAGCGATATCGGTAGATTTAGAATATGCGGTGACGACATTCAAGAGAATGTCAAGAACCAGAAAACCGATCTTACGTCTGTTACCGCAACGACAATGGTTGTAGAACAAGCTAAACAAAGTGAGGTTGAGTCTGAAGCTGAGTTTGAGGGTGAGGCTGAGGCTGAAGCTGAAGCTGAAGCTGAAGCTGAAGCTGAAGCTGAAGCTGAAGCTGAAGCTGAAAGTGAGAATGAGGATGAGGATGAAGCCGCAGCCGAGGAAGAggcggaggaggaggaagaagaggaagaggatgAAGACGACGATGATGGACCGCCTGTGTTAAGTCCAATAATGCCTTTGTTACCAGAAAACGAATCTGAAGAGCACAGCGGCACGACGGATCGCACGAGACACAAGCTCAGTCCGATGGTTTCCCTGAGTATGACTAAAGATCTGGAGGAATGCGAAATGACCGAAATGCCAAATGACGTGGAGAACGTGTCGAACGCGGCCAACCTCTTCGCGGCTAACAACAATGATTTGCCCGTAACGTGGGACGAAAACTTGGATGACAACGGAATCGACAATGACGATTGCAACTCCGACATGGAAGACAGAGATGTGGAGAAAAACGAAGAGTTCAGTAAGGAGTACAAGATGGAAGTAAAGATGGAGGATGATGATTTTGAAGAGGATTCCGCGTATGAGAACGTAGTGGATAATAGTAGAGAAGGTGATGGAGACAATCAAGTGCACGAGGTGCATAATCTGGACGGTACTGTGTTAATGGTGACTAATGACGCGGAAGGTAATCACATTTTGATAGAACAGAACGTGTTAGATATCGATAATGAGGACTCTAATGCTGAAGCGACGCAGTATATTTACCCAGAGACCGCTTACGAGATCGAGGAAGAGGATTACGCGACGCGAAATGAGAGCGATATCATGCAAACGGATGAGGTGCAAGGTAGTATGTCCTATGTTCAAGATACATCGGAGAATGAGGATAGCACGGAGGGTGATGTCGAGGAGAACAGTAGTGACGTGCAGAAACAGTAG
Protein Sequence
MHIFGQEGKNRQLVDKIQTCLPFKIIEDDCLPKVLCYRCMYNLENFYDFRTACVNAAAWLERNRPKEGASDDGANDSAQSGEMHAELLKGKENMPVLIPEAPVVNPNAALGTPPRLNSDGEADPEIEEILDTSEGTDEATVIDDSEDRRSEYEMAYEMDMETNPSDFLEMTPMVTEENEEECGMNNTNAAATTQDTAVFSHTSQQHEVYVCSLCNKAFSSKGHLSLHARIHVGEGDVIGERVITDDHTSYQRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCAYCSRIYSTRYNLDEHIKSRHAGLPPPPELSVPLSRTETRYQCQTCLMVYTDLADFTAHRQICIQEQRTDLLGQTEAQNSKIFADTSDISSVDSDDENKDFKNAEAKLAKNPQLTILKQALTKGDSLKRNFDDDGSTSSGKPKKIVKSEEGETNPQKRWYCESCPQSFTSVDSLKEHEIRHDAEKPFICILCKKDFVLKSSLIRHITTSHGVDPTPIVDSEKYLKATVMPQNWNDRVDTVFEKIEIKESPELSSSPEINLENDDKDYKNHENIEIETVFVCETCKRDFNDRASLWLHIRAMHKEYAAFTCGVCLKMCFDNTQLQNHVYMYHGRSKLLISEQRRYSCTICGRQHDSRKKLITHVSIHNVDPAYDPASFVQLNSNYYNENLNGNEGNEQVLDFDGEDGEKVDCYICYKSFPTEDHLIRHQRNAHKSDQIVSLDATGSGNTLSVNGNGNRAQYHLFFVCEVCGSSHSSKWERWLHINNTHNNESSIKCEWENCGKIFATKSLRNEHLQHHAVQGPSPNTCEICGKLWPTRVDYWKHVMGVHADTVPLICGVCLKVFSDVMQLSAHVKAKHWPLTSGDFCCDICGRPYSNKSKMSRHRKIHGLEVIDAVCDNSSFNETTNESVKPDHNNGASEIELSCDQCPELSFTTLDSLCNHRRIAHNLFPCDLCNKCYGRTSHLWKHVNRVHKGHADVTCPYCAKTSASRDHLAAHIAKIHRYLPAMGKDNQNCVASKSLSVEDDVLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVNHMDHPDLTCDHPSCKKLFRTKEDLESHRKDHKYHSNPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVESEHSSVLSNPNTCQVCGKQYASKWKAFDHTKKCHGKVFLTCKQCLAVFTDENDIRDHYEHVHNVPKDQLAVFEYRMDIGAKREGYETPDIIQGVYVKEEPDDMEFDEEICDESSNDSRKRRRSPNDTYDCEMCPEIFLNSDTLAKHYQNVHNTDPVRMFKKFKKDSDSKRKMRNRNNFECKNCKKQFSTKTLFWNHINLCTRRNSIGRFDMPNNVPTSILESHLKNNNQIPREESLPLTNESNLNIPDFNLFEDINMQLSAQKPVPNLMPLSQMKATGNGKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKSYQDLADHLKAEHAPVLSPEGNNFTCKTCGRYHNARSKLLLHMSIHIGNFQCQKCQQGFASEEKLNEHVTSCNGKEFDDHAVADEDNAKNDNDEKGSLIADETSVIEEAEEADFESEGEESRDIHEDNSENSEGDNSENSDDSDSDSNSSSSEDENENEEGEEEEEENENENDNENESDTRTTSRETGDSVSCNSESDDDESDMDETEVMEKKTLQLSDIGRFRICGDDIQENVKNQKTDLTSVTATTMVVEQAKQSEVESEAEFEGEAEAEAEAEAEAEAEAEAEAEAESENEDEDEAAAEEEAEEEEEEEEDEDDDDGPPVLSPIMPLLPENESEEHSGTTDRTRHKLSPMVSLSMTKDLEECEMTEMPNDVENVSNAANLFAANNNDLPVTWDENLDDNGIDNDDCNSDMEDRDVEKNEEFSKEYKMEVKMEDDDFEEDSAYENVVDNSREGDGDNQVHEVHNLDGTVLMVTNDAEGNHILIEQNVLDIDNEDSNAEATQYIYPETAYEIEEEDYATRNESDIMQTDEVQGSMSYVQDTSENEDSTEGDVEENSSDVQKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01355612;
90% Identity
iTF_01423087;
80% Identity
-