Basic Information

Insect: Tetramorium simillimum
Gene Symbol: Sall1
Assembly: GCA_011636635.1
Location: VBVQ01003137.1:15437-18739[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0034 0.41 11.8 4.4 1 23 16 38 16 38 0.98

2 17 0.00053 0.063 14.3 2.8 1 23 44 66 44 66 0.98

3 17 8.1e-05 0.0095 16.9 2.6 1 23 111 134 111 134 0.95

4 17 0.35 41 5.4 0.8 3 23 145 165 143 165 0.95

5 17 7.4e-08 8.7e-06 26.4 1.9 1 23 171 193 171 193 0.98

6 17 2.9e-06 0.00035 21.4 1.1 1 23 199 221 199 221 0.97

7 17 1e-07 1.2e-05 26.0 0.9 1 23 227 249 227 249 0.99

8 17 0.4 47 5.3 0.4 3 23 282 303 281 303 0.96

9 17 7.7e-05 0.009 17.0 1.0 1 23 309 332 309 332 0.97

10 17 1.5 1.8e+02 3.4 0.2 2 23 338 360 337 360 0.94

11 17 2.6e-05 0.003 18.4 0.3 1 23 366 388 366 388 0.98

12 17 0.063 7.4 7.8 1.4 2 23 395 417 394 417 0.94

13 17 1e-05 0.0012 19.7 2.3 1 23 437 460 437 460 0.95

14 17 0.0019 0.23 12.5 0.1 1 23 471 493 471 493 0.95

15 17 0.0075 0.88 10.7 3.6 1 23 499 521 499 521 0.94

16 17 4.6e-07 5.4e-05 23.9 1.1 1 23 527 549 527 549 0.98

17 17 5.1e-06 0.00061 20.6 1.5 1 23 555 578 555 578 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0034	0.41	11.8	4.4	1	23	16	38	16	38	0.98
2	17	0.00053	0.063	14.3	2.8	1	23	44	66	44	66	0.98
3	17	8.1e-05	0.0095	16.9	2.6	1	23	111	134	111	134	0.95
4	17	0.35	41	5.4	0.8	3	23	145	165	143	165	0.95
5	17	7.4e-08	8.7e-06	26.4	1.9	1	23	171	193	171	193	0.98
6	17	2.9e-06	0.00035	21.4	1.1	1	23	199	221	199	221	0.97
7	17	1e-07	1.2e-05	26.0	0.9	1	23	227	249	227	249	0.99
8	17	0.4	47	5.3	0.4	3	23	282	303	281	303	0.96
9	17	7.7e-05	0.009	17.0	1.0	1	23	309	332	309	332	0.97
10	17	1.5	1.8e+02	3.4	0.2	2	23	338	360	337	360	0.94
11	17	2.6e-05	0.003	18.4	0.3	1	23	366	388	366	388	0.98
12	17	0.063	7.4	7.8	1.4	2	23	395	417	394	417	0.94
13	17	1e-05	0.0012	19.7	2.3	1	23	437	460	437	460	0.95
14	17	0.0019	0.23	12.5	0.1	1	23	471	493	471	493	0.95
15	17	0.0075	0.88	10.7	3.6	1	23	499	521	499	521	0.94
16	17	4.6e-07	5.4e-05	23.9	1.1	1	23	527	549	527	549	0.98
17	17	5.1e-06	0.00061	20.6	1.5	1	23	555	578	555	578	0.98

Sequence Information

Coding Sequence: ATGAACATAGCTCGTCACAAACTGATCCACACGGGGTTGAGAATGTTCACCTGCGATCTCTGCGAGTACAGTACCAATCAGAAGTCCAATCTGGAATGCCATCGTCGGCGGCACGCCAAGGACTACAGCTTCAAGTGCGAGACGTGTGACAAGGGCTTCTTCCACAGGACCGAGTACCTGGAGCACCAAAACGCCCACACGAACAAGAGTCTGTATCGTTGCGAGCACTGTTGCAAGCACTACCTGTACAAGAAGAACCTATCGGTGCACCTGGTGATGCATCATGCCGGCAAACAGACCGCCGCAGCCGCGAGGAACGCGAGGACGAGGCACGCGTGCAAGTTCTGCCCGGAGAGATTCGTGTACAAGAGGCTGCTGGAAAGGCACATGAAGAACCAGCACGGATTCGCGGACGCGCCGGCGAAGCACTTGTGCGACCTGTGCGGTGCCGAACTGTCGTCGATGAGACGACTGATGGTGCACAAACGCAATCACGCGGGCGAGAAGATCTTCGAGTGTGACACGTGCGACAAGAAGTTCACCAGCAAGGAGAACCTAATGATCCACAGGCGGACGCACACGGGCGACAAGCCGCACGTGTGCCCGCAGTGCGGCCGCGGCTTCACGCAGAGGACATCCCTGGTCCTGCATCTGCGATATCATTCGGGTCAGAGACCTTACCAGTGCCAGGATTGCGGCAAGGGATTCGTGTCCAACACCTTGCTCAAGAGGCATCGCAAGGTGCATGAGAAGGCCGCCCAGTGGACGAATAATCACAATTTGAAGGTGAAGAACGAGGATCTGCCTGATCTTGGACAAAAATTCGAAGGTGGCGAGAAGATCTGCGAGCTATGCCAGGCGAAATTCCACTTTGTTACTAGACTGGTCGCGCATCTGAGGATAGCGCACGGCATCCTGCGGCCTTTCAAGTGCGTCACTTGCGACAAGAATTATCCCCAGCAGTTCATGTTGAACGCCCACGTGAAGAAGTCTCACACGCCGAAAACCGTGCCGTGTACCCAGTGCAGCTTTATGGGTGTCAACGTGATCGACGTGGAGAAACACAGACGGCGACGTCACCGAGCCCTACCGAAATTCACATGCGAGATTTGCAGCCAGGATTTCGCCGATAAGGACACTCTGACCGCGCACACGACAATGCACGATTTCATGCAATATCAGCGATGCAACGCATGCGGTAGCATCTTCAACGATATGCACAGCTTGAAGGAACACAATCGTCTTTACCACTACGATCCTGCAACGGATGGGAAGCTGTTCGAGGAGTCCAGCGAGAACGGATCCGAGCACAAATGCGACGTTTGCGGCAAGGTCTACAAGTATAGTTCAATGTTGAAGCAGCACAAGGACAGAGTTCACGGTGGCCCGTCGAACCAGGAGAGATGCAGGTATCTTTGTGCACTGTGCGGCAAGGAGTTGAAGACCGCGAAGGGCCTCGAAATCCACAACAGGTCGCACACCGGCGAAAAGCCGTACACGTGCGAAGTGTGCGGCAAGTGTTTCGCCTGTGAGACCCTGTTGAGAACTCACAATGTCACCCACACCGGAGAACGGAAATATTCGTGCGACCAGTGCGGCAAGGCTTTTACGCAAAGATCCACTCTGGTTGTTCACAAGCGATATCACACGGGCGAACGACCGTACGTTTGTCCTCGGTGCGGTAAGGGTTTCGTCACGCGAACTGTCCTTAATACTCACATGAAGTCTTGTCATTGA
Protein Sequence: MNIARHKLIHTGLRMFTCDLCEYSTNQKSNLECHRRRHAKDYSFKCETCDKGFFHRTEYLEHQNAHTNKSLYRCEHCCKHYLYKKNLSVHLVMHHAGKQTAAAARNARTRHACKFCPERFVYKRLLERHMKNQHGFADAPAKHLCDLCGAELSSMRRLMVHKRNHAGEKIFECDTCDKKFTSKENLMIHRRTHTGDKPHVCPQCGRGFTQRTSLVLHLRYHSGQRPYQCQDCGKGFVSNTLLKRHRKVHEKAAQWTNNHNLKVKNEDLPDLGQKFEGGEKICELCQAKFHFVTRLVAHLRIAHGILRPFKCVTCDKNYPQQFMLNAHVKKSHTPKTVPCTQCSFMGVNVIDVEKHRRRRHRALPKFTCEICSQDFADKDTLTAHTTMHDFMQYQRCNACGSIFNDMHSLKEHNRLYHYDPATDGKLFEESSENGSEHKCDVCGKVYKYSSMLKQHKDRVHGGPSNQERCRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCPRCGKGFVTRTVLNTHMKSCH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00869051;
90% Identity: iTF_01409381;
80% Identity: -