Basic Information

Insect: Tetramorium parvispinum
Gene Symbol: -
Assembly: GCA_011638315.1
Location: VBVR01003737.1:10575-16043[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 7.5e-05 0.0088 17.0 0.2 2 23 739 760 738 760 0.97

2 15 0.11 13 7.0 1.1 1 19 766 784 766 785 0.92

3 15 0.74 87 4.4 0.5 2 23 793 814 792 814 0.95

4 15 5.8e-05 0.0068 17.4 1.4 3 23 823 844 822 844 0.98

5 15 0.0022 0.25 12.4 2.0 1 23 851 874 851 874 0.95

6 15 7.6e-05 0.0089 17.0 0.7 1 23 880 903 880 903 0.94

7 15 5.4 6.4e+02 1.7 1.8 3 23 912 931 911 931 0.83

8 15 1.1e-07 1.3e-05 25.9 2.1 2 23 937 958 936 958 0.97

9 15 1.8e-06 0.00021 22.1 0.2 1 23 964 986 964 986 0.99

10 15 0.00045 0.053 14.6 2.4 2 23 998 1020 997 1020 0.95

11 15 0.0063 0.74 10.9 2.5 1 23 1026 1049 1026 1049 0.96

12 15 0.023 2.7 9.2 2.8 2 23 1070 1092 1069 1092 0.94

13 15 0.0002 0.023 15.7 0.5 2 23 1099 1121 1098 1121 0.96

14 15 4.6e-05 0.0054 17.7 1.0 3 23 1130 1150 1128 1150 0.96

15 15 0.00097 0.11 13.5 2.3 1 23 1156 1179 1156 1179 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	7.5e-05	0.0088	17.0	0.2	2	23	739	760	738	760	0.97
2	15	0.11	13	7.0	1.1	1	19	766	784	766	785	0.92
3	15	0.74	87	4.4	0.5	2	23	793	814	792	814	0.95
4	15	5.8e-05	0.0068	17.4	1.4	3	23	823	844	822	844	0.98
5	15	0.0022	0.25	12.4	2.0	1	23	851	874	851	874	0.95
6	15	7.6e-05	0.0089	17.0	0.7	1	23	880	903	880	903	0.94
7	15	5.4	6.4e+02	1.7	1.8	3	23	912	931	911	931	0.83
8	15	1.1e-07	1.3e-05	25.9	2.1	2	23	937	958	936	958	0.97
9	15	1.8e-06	0.00021	22.1	0.2	1	23	964	986	964	986	0.99
10	15	0.00045	0.053	14.6	2.4	2	23	998	1020	997	1020	0.95
11	15	0.0063	0.74	10.9	2.5	1	23	1026	1049	1026	1049	0.96
12	15	0.023	2.7	9.2	2.8	2	23	1070	1092	1069	1092	0.94
13	15	0.0002	0.023	15.7	0.5	2	23	1099	1121	1098	1121	0.96
14	15	4.6e-05	0.0054	17.7	1.0	3	23	1130	1150	1128	1150	0.96
15	15	0.00097	0.11	13.5	2.3	1	23	1156	1179	1156	1179	0.96

Sequence Information

Coding Sequence: ATGCCGAATCCTGAAGTGACGAAACGCGATCACACGTACAGCGAGTCGAAACCTCAACATGCCAACAATGCCAACAATGCCAATAGTGCCAACAGTGGCAACAGTGCTCGTGGCAAGCTATCCAAGGTGGGATCTATCGTGGGTCAGATTAGGGACATTGacgaattgaagaaaattgcgCCACGCGTCCGTCTACAGGACACTGAAAGCTTGAACGAGTTGACAAGGATCTCTTCTTTAAGTAACACTAACGTACAGCACAACGATACACTCGTTCTTGAGAGGACGCGCCAAGAACTGAGAAAGTACTGTCGCACCTGCGCTGGCTTAAAACTACCCTTGGTGGACATCTTTAGTGAGAAGGGCATTAAATTGCGACTGAGTCAGCAAATCAAGCACCTCGAAGTGAATCCTTATGATAGTCTCTCTACACAGATGTGCATGGATTGTATATGTGATCTTAGAATGAGTTACACATTTTTCATGCAGATAAAAAAAGCTGAGATAAAACTCAAATCTATCCATGCTACGCTCACGACTGATAGTGCCGCGAAGAAACGGACGCTGAGCGACGAGTCTTCGACAAGAAAAGAAGAGCAACCATCTTGTCCagAAACAAAGCAGGATTATCAATTATCCTCTACAATCCAACAAAATCTCACTTCATTGTCACTGAAGCGAGAAAACCAAACAACTCCCGAAAATCAAGCAAACAATTCTGTTCCGAAAATCTGTGCCATTTTTTCGTTGAATAACGAATCGAAGGTAAATTCTGGAAAGGAGAGAACGAAAAACGATGATGAGGATGAGGAAGATGAGATAGTACAGACAGGCCCTGGGATATTCGAAGAAGTAGCAGAGGGAGAGGATGAAGAATCCATCGAGGAATTTGATCCTGAAGATCCCGCGCTCCtggaagatgaagaagaagaagaggaagaaggaggaggaggagaagcaGAAcaaggaggaggaagaggaaaaggaaaagaagtaGAAGTAGAAGAAGAATCGTCATCTTCAAGATCCCCAGCAACTGTCTACAAGTACGATATGGCAGCAAAGTCTTACGTGAGGTTGGAACCAAGTGAAGAGGGAGTTTCTGTAAAATCTGGAGCTTCCCAGATTTCGGAAGGCGAAGGAGAAAATCAAAGAGAGGGAATGAGGCAaccaaatattttgaaaagaaaactgATAATGCCAACGATAACGACAAAGAACGAGGGCGGGGAGGACGAGTTACAAAGCACAGTGGAGGAGCGTAAAGTGCAAAAGCTAGATACAAACAATCTCTCGAATGTGAATGGTCCTCTAGAAGAGGATGGCATTATGTACGTAACTGTAAAGGGATCCAAACCAAATGAGATTCTTCTAGTGAAGGTCAAGAAAATGGACAAACCCATGGAAGCAAAGCGTGCGGTAATCTCCACTGATTTCAAACCTGTCGAACGTTTTCTTAAACGTTATGAAACATTGACATCGAAAGATTCCTTATCTCGACGTCCTGATGCCCGCGAGCAAATAATTGAGGAACAAatcgaagaatataaaaagaaacgagaaaaagtTCTTGGAGGTCAGTCGGTAGTAACGTTTCCAGTGAACGAAATCCAAAAAGAAGtacaagaagaagaaatttctGCCAagttaaattttgcaaagacGGAAGAAGAAATGATAGTTCCGAAAGTGGTTGGAGAGAGAGGCGAGGAAGTGCAGGAGCAGGAGCAGGATCGGAAACAAGAGCAAGAACAAGAGCAAGAGCAAGAGCAAGAGCAAGATGAAGAGCCAGATGAGAAGGTGGTCGAGGAGAATCGGGAAGAGAAGTTGGTAAAGGATGAAAAGATTGACGAAAATCAAGAAAAGTCCATTGATAATGTAGAAGAACATCTCTCAAagtcaagattaaaattaaaatgggaAGAGACGAAGCGGAAAAAGGAAAGTTTACAAAAGGAATTAGACGAGTCGTATAGCGAaccaaatttagaaaaattggcAAAAGTTTTGGGGGAAAGGGAAAAGAATCTGCAGGAATTCCTGGAGTACCTGAAGCAACGTAAAATCGTTCTTACTCGCCTCAAGGACGAGGACATAATCTCCCTTTATGAAGATCGATTCTCCACTACTTTAAAATCATCCAACTCTAAATCGCTGCCAGACCTTATCGACACTGAACCGCCCATCGACCCTCTTTCTGAAGAACGCTATTTAGAATGTGACTATTGCTCCGAAACCTTTTCCAATCGCGATGTCCTCGAGGAACATCTCAAGTCCCACGACTACCGTATTCTTCATTATTGCGACGACTGTGGAGAAGAATTTCAAACGAATAAAGCGAAAAGAAATCATAATGTGATCTGCGTaaggaaattaatttgcaaatattgcgACATAATTCTGGATTCCAGAGGAAAGAAACGTCAACATGAGCAGAAACACGTTGATGCCCTTTACGGTCAACTTTGCGAGATTTGTGGTGAGAGATTCAAACATCAAGGAACCTTGGATCAACATCTGAAGACGCAGCATACGAGCTTGGAGAAGATCTATCAGTGTCCAAAGTGTCCAAAGAAATTTGCTTTCAAACAAAAACTGAGCTTTCATTTGAAATCTGTTCATACAACTATGAGAGCGTATCTTTGCGAGGATTGTGGCGCAGATTTTAAGAATCCCGCGAGCTTGAGGCATCATAGAATCAGAAAGCATCAACCGGTTGGAAATAAGAGGGAATGCCAAGTTTGCAGGAAATTGGTGCCGTTTTACAGTTTGTCGAAGCACATGCACACGCATAAAGCTTACAGTATTCAGTGTCCTCATTGCGACAAAATGTTCAAAAACAGCTCGACCTTAAAGCAACATGTAAGAATTCACGAAGATCAAAGGCAGTATCGTTGTGACACCTGTGGCGTTGGATTTAATCGGAGGGATGGCTTGAGGCTGCATATGAGAGTGCACGAGAAAACTGGTAGTAGAGGCTTGAAGGAGTGCTCCTGCCAAGTTTGTGGGGAAAAGTTTCCGAATCATTCGACTTTGGTAATTCACAGGAACAGGGTGCACAAAGATGGGAGGCAGTATACGTGTCATATTTGTAACAGGTCAATGATTTCGACGAGATCGCTCGAGTGGCACATGTCGCACATTCACAACGAATCGATGCCAGGCATTATTCGCGACGAGTCTGGTCTGCCTGAAAAAAGGCGGGTTTCCTGTTATCATTGCAACAAGACCTTCAAGACGGAACTAATTCTTCGCACACACATTAAGAATACGCACATGGAGAAGGACCCGTTGAAATGCACAGATTGCGAGGCCGTTTTCACATCTGAAGTGCGTCTACGGCATCATATGATGGTCGTGCACAATCGTCTCGAGGGTACTTTGGCATGTCCTCACTGTCCGAAACGATTTGTGAATCAATTAAGGCTAAAGACTCATATGATCTCTCATTCTGAAGAAAGACCATATACCTGCGAGATCTGTGGTTTTAATCTGAAAACAAAGATCCAGCTGATTAAGCATCATCAAAACCGACACAGCGACGAGAGACCTCTGCAGTGCAAGTACATAGATTATTATCTTAGTAAAgattaa
Protein Sequence: MPNPEVTKRDHTYSESKPQHANNANNANSANSGNSARGKLSKVGSIVGQIRDIDELKKIAPRVRLQDTESLNELTRISSLSNTNVQHNDTLVLERTRQELRKYCRTCAGLKLPLVDIFSEKGIKLRLSQQIKHLEVNPYDSLSTQMCMDCICDLRMSYTFFMQIKKAEIKLKSIHATLTTDSAAKKRTLSDESSTRKEEQPSCPETKQDYQLSSTIQQNLTSLSLKRENQTTPENQANNSVPKICAIFSLNNESKVNSGKERTKNDDEDEEDEIVQTGPGIFEEVAEGEDEESIEEFDPEDPALLEDEEEEEEEGGGGEAEQGGGRGKGKEVEVEEESSSSRSPATVYKYDMAAKSYVRLEPSEEGVSVKSGASQISEGEGENQREGMRQPNILKRKLIMPTITTKNEGGEDELQSTVEERKVQKLDTNNLSNVNGPLEEDGIMYVTVKGSKPNEILLVKVKKMDKPMEAKRAVISTDFKPVERFLKRYETLTSKDSLSRRPDAREQIIEEQIEEYKKKREKVLGGQSVVTFPVNEIQKEVQEEEISAKLNFAKTEEEMIVPKVVGERGEEVQEQEQDRKQEQEQEQEQEQEQDEEPDEKVVEENREEKLVKDEKIDENQEKSIDNVEEHLSKSRLKLKWEETKRKKESLQKELDESYSEPNLEKLAKVLGEREKNLQEFLEYLKQRKIVLTRLKDEDIISLYEDRFSTTLKSSNSKSLPDLIDTEPPIDPLSEERYLECDYCSETFSNRDVLEEHLKSHDYRILHYCDDCGEEFQTNKAKRNHNVICVRKLICKYCDIILDSRGKKRQHEQKHVDALYGQLCEICGERFKHQGTLDQHLKTQHTSLEKIYQCPKCPKKFAFKQKLSFHLKSVHTTMRAYLCEDCGADFKNPASLRHHRIRKHQPVGNKRECQVCRKLVPFYSLSKHMHTHKAYSIQCPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHEKTGSRGLKECSCQVCGEKFPNHSTLVIHRNRVHKDGRQYTCHICNRSMISTRSLEWHMSHIHNESMPGIIRDESGLPEKRRVSCYHCNKTFKTELILRTHIKNTHMEKDPLKCTDCEAVFTSEVRLRHHMMVVHNRLEGTLACPHCPKRFVNQLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCKYIDYYLSKD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01423842;
90% Identity: iTF_01423842;
80% Identity: -