Basic Information

Insect: Tetramorium parvispinum
Gene Symbol: Gzf1
Assembly: GCA_011638315.1
Location: VBVR01003133.1:13609-16991[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1.1e-05 0.0013 19.7 0.5 1 23 11 33 11 33 0.97

2 18 0.0036 0.43 11.7 4.4 1 23 39 61 39 61 0.98

3 18 0.00056 0.066 14.2 2.8 1 23 67 89 67 89 0.98

4 18 0.00012 0.014 16.3 2.7 1 23 134 157 134 157 0.95

5 18 0.37 43 5.4 0.8 3 23 168 188 166 188 0.95

6 18 1.3e-07 1.6e-05 25.7 1.8 1 23 194 216 194 216 0.98

7 18 3.1e-06 0.00036 21.4 1.1 1 23 222 244 222 244 0.97

8 18 1.1e-07 1.3e-05 25.9 0.9 1 23 250 272 250 272 0.99

9 18 0.42 50 5.2 0.4 3 23 303 324 302 324 0.96

10 18 8.1e-05 0.0095 16.9 1.0 1 23 330 353 330 353 0.97

11 18 0.62 73 4.7 0.2 2 23 359 381 358 381 0.95

12 18 2.7e-05 0.0032 18.4 0.3 1 23 387 409 387 409 0.98

13 18 0.066 7.8 7.7 1.4 2 23 416 438 415 438 0.94

14 18 1.3e-05 0.0015 19.4 2.0 1 23 458 481 458 481 0.93

15 18 0.002 0.24 12.5 0.1 1 23 492 514 492 514 0.95

16 18 0.029 3.4 8.9 3.7 1 23 520 542 520 542 0.89

17 18 4.9e-07 5.7e-05 23.9 1.1 1 23 548 570 548 570 0.98

18 18 2.3e-05 0.0027 18.6 2.3 1 23 576 599 576 599 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1.1e-05	0.0013	19.7	0.5	1	23	11	33	11	33	0.97
2	18	0.0036	0.43	11.7	4.4	1	23	39	61	39	61	0.98
3	18	0.00056	0.066	14.2	2.8	1	23	67	89	67	89	0.98
4	18	0.00012	0.014	16.3	2.7	1	23	134	157	134	157	0.95
5	18	0.37	43	5.4	0.8	3	23	168	188	166	188	0.95
6	18	1.3e-07	1.6e-05	25.7	1.8	1	23	194	216	194	216	0.98
7	18	3.1e-06	0.00036	21.4	1.1	1	23	222	244	222	244	0.97
8	18	1.1e-07	1.3e-05	25.9	0.9	1	23	250	272	250	272	0.99
9	18	0.42	50	5.2	0.4	3	23	303	324	302	324	0.96
10	18	8.1e-05	0.0095	16.9	1.0	1	23	330	353	330	353	0.97
11	18	0.62	73	4.7	0.2	2	23	359	381	358	381	0.95
12	18	2.7e-05	0.0032	18.4	0.3	1	23	387	409	387	409	0.98
13	18	0.066	7.8	7.7	1.4	2	23	416	438	415	438	0.94
14	18	1.3e-05	0.0015	19.4	2.0	1	23	458	481	458	481	0.93
15	18	0.002	0.24	12.5	0.1	1	23	492	514	492	514	0.95
16	18	0.029	3.4	8.9	3.7	1	23	520	542	520	542	0.89
17	18	4.9e-07	5.7e-05	23.9	1.1	1	23	548	570	548	570	0.98
18	18	2.3e-05	0.0027	18.6	2.3	1	23	576	599	576	599	0.98

Sequence Information

Coding Sequence: TTGAAGAACTTACACAATATCGACCGGGCGTTCAGCTGCGACGAGTGCAACAAGACATTTCGCAGTCCTATGAACATAGCTCGTCACAAACTGATCCACACGGGGTTGAGAATGTTCACCTGCGATCTCTGCGAATACAGTACCAATCAGAAGTCCAATTTAGAATGCCATCGTCGGCGGCACGCCAAGGACTATAGCTTCAAGTGCGAGACGTGTGACAAGGGCTTCTTCCACAGGACCGAGTACCTGGAACACCAAAACGCCCACACGAACAAGAGTCTGTATCGTTGCGAGCACTGTTGCAAGCATTACTTGTACAAGAAGAACCTATCGGTGCACCTGGTGATGCATCATGCCGGCAAACAGACTGCCGCAGCCGGGAGGAACGCGAGGACGAGGCACGCGTGCAAGTTCTGTCCGGAGAGATTCGTGTACAAGAGGCTGCTGGAAAAGCACATGAAGAATCAGCACGGCGTCGCGGACGCGCCGGCGAAGCACTTATGTGACCTGTGCGGCGCCGAACTATCGTCGATGAGGCGACTAATGGTGCATAAACGCAATCACGCGGGCGAGAAGATTTTCGAGTGTGACACGTGCGACAAGAGGTTCACCAGCAAGGAGAACCTGATGATCCACAAGCGGACGCACACGGGCGACAAACCGCACGTGTGCCCGCAGTGCGGCCGCGGCTTCACGCAGAGGACATCCCTGGTTTTGCATCTGCGATATCATTCGGGTCAGAGACCTTACCAGTGCCAGGATTGCGGCAAGGGATTCGTGTCCAACACCCTCCTCAAGAGGCATCGCAAGGTGCATGAGAAGGCCGCCCAGTGGACGAATAATCATGATTTGAAGAACGAGGATCTGCCTGATCTTGGACAGAAATTCGAAGGTGGCGAGAAGATCTGCGAGCTATGCCAGGCGAAATTCCACTTTGTTACTAGACTGGTCGCGCATCTGAGGATAGCGCACGGCATCCTGCGGCCTTTTAAGTGCGTCACTTGCGACAAGAATTATCCCCAGCAATTCATGCTGAACGCCCACGTGAAGAAGTCACACACGCCGAAAACCGTGCCGTGTACCCAGTGCAACTTTATGGGTGTCAACGTGATCGATGTGGAGAAACACAGACGGCGCCGTCACCGAGCCCTACCGAAATTCACATGCGAGATTTGCAGCCAGGATTTCGCCGATAAGGACACTCTGACCGCGCACACGACGATGCATGATTTCATGCAGTATCAGCGATGCAACGCATGCGGTAGCATCTTCAATGATATGCACAGCTTGAAGGAACACAATCGTCTTTACCACTACGATCCTGCAACGGATGGGAAATTGTTCGAGGAGTCCAGCGAGAACGGATCCGAGCACAAATGCGACGTTTGCGGCAAGGTCTACAAATATAGTTCGATGTTGAAGCAGCACAAAGTCAGAGTTCACGTTGACCCGTCGAACCACGAGAGATGCAGGTATCTTTGCGCACTGTGCGGTAAGGAGTTGAAGACCGCGAAGGGCCTCGAAATCCACAACAGGTCGCACACCGGCGAAAAGCCGTATACGTGTGAAGTGTGCGGCAAGTGTTTTGCCTGTGATACCCTGTTGAGAACTCACAATGTCACCCACACCGGAGAACGGAAATATTCGTGCGACCAATGCGGCAAGGCTTTTACGCAAAGATCCACTCTGGTTGTTCACAAACGATATCATACGGGCGAACGACCGTACGTTTGTTCTCGGTGCGGCAAGGGTTTCGTCACGCGAACGGTCCTTAATACTCACATGAAGTCTTGTCATTGA
Protein Sequence: LKNLHNIDRAFSCDECNKTFRSPMNIARHKLIHTGLRMFTCDLCEYSTNQKSNLECHRRRHAKDYSFKCETCDKGFFHRTEYLEHQNAHTNKSLYRCEHCCKHYLYKKNLSVHLVMHHAGKQTAAAGRNARTRHACKFCPERFVYKRLLEKHMKNQHGVADAPAKHLCDLCGAELSSMRRLMVHKRNHAGEKIFECDTCDKRFTSKENLMIHKRTHTGDKPHVCPQCGRGFTQRTSLVLHLRYHSGQRPYQCQDCGKGFVSNTLLKRHRKVHEKAAQWTNNHDLKNEDLPDLGQKFEGGEKICELCQAKFHFVTRLVAHLRIAHGILRPFKCVTCDKNYPQQFMLNAHVKKSHTPKTVPCTQCNFMGVNVIDVEKHRRRRHRALPKFTCEICSQDFADKDTLTAHTTMHDFMQYQRCNACGSIFNDMHSLKEHNRLYHYDPATDGKLFEESSENGSEHKCDVCGKVYKYSSMLKQHKVRVHVDPSNHERCRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACDTLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCSRCGKGFVTRTVLNTHMKSCH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00869051;
90% Identity: iTF_01409381;
80% Identity: -