Basic Information

Insect: Tetramorium immigrans
Gene Symbol: -
Assembly: GCA_011636585.1
Location: VBVO01000468.1:45752-54340[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.8 2.2e+02 3.2 0.4 6 20 316 330 315 332 0.93

2 9 1e-06 0.00013 22.8 2.5 1 23 580 602 580 602 0.98

3 9 2.5e-05 0.0032 18.4 2.0 1 23 608 630 608 630 0.98

4 9 1.6e-06 0.0002 22.2 0.3 2 23 639 660 639 660 0.98

5 9 5.3e-05 0.0066 17.4 0.1 3 23 668 688 666 688 0.97

6 9 1.7e-07 2.2e-05 25.2 3.0 1 23 694 716 694 716 0.98

7 9 2.8e-06 0.00036 21.4 0.7 1 23 722 744 722 744 0.98

8 9 6e-05 0.0075 17.2 7.5 1 23 750 772 750 772 0.98

9 9 0.00034 0.042 14.9 1.4 1 21 778 798 778 799 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.8	2.2e+02	3.2	0.4	6	20	316	330	315	332	0.93
2	9	1e-06	0.00013	22.8	2.5	1	23	580	602	580	602	0.98
3	9	2.5e-05	0.0032	18.4	2.0	1	23	608	630	608	630	0.98
4	9	1.6e-06	0.0002	22.2	0.3	2	23	639	660	639	660	0.98
5	9	5.3e-05	0.0066	17.4	0.1	3	23	668	688	666	688	0.97
6	9	1.7e-07	2.2e-05	25.2	3.0	1	23	694	716	694	716	0.98
7	9	2.8e-06	0.00036	21.4	0.7	1	23	722	744	722	744	0.98
8	9	6e-05	0.0075	17.2	7.5	1	23	750	772	750	772	0.98
9	9	0.00034	0.042	14.9	1.4	1	21	778	798	778	799	0.94

Sequence Information

Coding Sequence: ATGTTATTACTGTGCGCACTCTTAGGTCATAAAGAAGTATTGCTGGCGCACAGCAAAGTCACCGCCCACTGCGAGCCGATCACAGTGATCCTGGCCGAGGTGGAGGCGCCGGAACTCGCGGCTCTTCTCGGGTTCGTCTACACCGGAAGCGCGACGGTTCCGCGGATGCGGCTGGACGCGTTTCTGCGCGCTGCCGAGGCCCTGCGCATCCGGCTGCCGCCGGTGCCGGGGATGACGACCTGCGGCGAGCAGGCGGCGGACTGCAAGCTGGAGGACGTTAAGGACGTCAAAGTTAGCCCCAAGTACCTGCAGTGCGATCAGTATCCTTGGTACCGATCGAAAAGATTATCCTACGAAGAGCCGTACGACAGAAAAGAATCCTACATCAGAATATTCCATACGGACGACGTCCATAGAAATGTGTTCAGGGACATCAGAGCGCTTCACGAGGTCAACAATCCTGGACCGTCGTTTGGTGCTGGCTGTCCGAGCGCGTGGTCGCCCGGCAGTTTCTCGCATCAGGATAGACCAACGGGTGATCCTTCCGCGGATAAGAATCACAGCTCGATGATACTCGCCGACAAGAATTCGGTAATAGCTCCCAGTAACGAATCGTCCTTCAGTATGTATCAACGAGGCACGTGTCTCCCTGGTGGACCGCCCGCGGAAGGATACGCTGCTGGTCCAGATACCTTGGAGAAGATCAGGATGGGATACGAGAGGTTGCACATGAGCTGCCCCACGGAGAAGCCGCTTATGAACGAGGACGTTCTCGCGGGAGGATCGGAGGGGGAGTcttgcggcgcggcgcgggaCGAGTGTCCCTACCAGAGCCCGATACCGTTGTCGTCCTTGCAGTGCGCCACCGCTACCGTCGGTCAGACGACGAGGTCATTCGAGATGCTCGATTACGCCTCGCAGACCTCGGCGGGCGAGGATCTCAGCTGCGGCGAAAGTTGTTGTAGGTGGAGAACCGCTCGCAGACACGTGGCGAATCGTGTCACCGCATCGCCATGGCGCCAGATTGTCAGGCCTCATCATTCACCAAGGACCCCACGAGCCATTCTCGCGATCCAACGTCACACCGATGACGAAATTCAGAAAAAGTCTCTGGCAGCAGAACCAATCCGATCCACGGTAATATCAATGAGCCCGAAGAATCTCGTTCATTCCCCGAAAAGCGCTCCGCGAAGTGACGGGGTTTGCCCTACGGCCTTTGAAGTTCCTACCAGTTGCGAGACGAGTTTTAACAATGACTTGAGATTATCGCGCGAGATAATCGGTGATCCGGAAGCGAAAATCCAAGAGATCTATCGATCGCCGATCCCATTCACACCCTCCGATCAGATGACGCCGCCTGCGAGCGCACGGCGCAACCCCTCGCCGAGAAGCAACGAGCAGCCCCTCTTTCAGACTGTTGGCAGCGCGTCCACGCAATCACTATCCACGGGCAACAACAGCGTTATCACGAACGCCGGCAAAAGCGGATACGGATCGACGCAGGTTCCGCAGACACCGCAGACGAAGCCCGAATTGTCGCATCCGATCAGCAGGCTCTGCGACACGATCGAGGCCGACGAGAGGAAAGAGACGCCGAAGACGGAAGTGCCACCCGCGAGCGCGGAGAAGAGCGGAGAGGAGAGGATCGCGAGGATTTTGGTTAACAGCGACAGTAACAATAACAACGAGACGATCGTGAGCACGGAAGTGACGCAGCGCGGACGATCGGCGGACGATCACCGGTGCGATCAGTGCGGAAAGACTTTCGTCACGAGAGCCTCACTCAAGGTGCACAGCCGAACGCACTCCGGTGAAAAGCCGTTCCGCTGCGCCGACTGCGGCAAGCAGTTTTCGCAGCTGCGCAATTACAAGTACCATCGCAGCGTGCATGAGGGCACGCGGGAGTTCGCCGCCACTTGTCCGGAATGCGGCAAGTACTTCAATGACCGCGGCTACCTGAGCTCGCACATGAAGATCCATCGGAACCGCAAGGAGTACGGCTGCGCGGAATGCGGGAAGAGCTTCAATCAGCGTGTGGCCTACAATATGCACGTGCGCATACACACGGGCGTGAAGCCGCATCAGTGCGATCAGTGCGGAAAGGCGTTCTCGCGGAAGATGCTGCTCAAGCAGCATCTGAGGACTCATTCCGGCGAACGGCCGTATCAATGCCAGGTCTGCCAGAAGGCGTTCGCCGACCGCTCCAACATGACCCTGCATACTAGACTGCACTCCGGCTTGAAGCCCTACCAGTGCACCCTGTGCTCCAAGGCTTTCACCAAGAAGCATCACCTCAAGACCCACCTCAATTACCACACCGGTACCAAGCCCTACTCCTGCACCAATTGCGGCGGCAGGTTCTCACAGAGCAGCAACATGAGAACCCATTTCAAAAAGTGCATCGTCAACAATACTTCCGGAATGACGGCCAAGTCCGGCGATGAAGGCGGCACCGATCGCCCCGACGCTGAGAGCGGCATTGCGCCGCAGGTGGTCTTGACCCCGCCCAATTCCGATCAGGAGTCCAGCATCCTGACACCGATCTCCAAGAACGCCGTCGCGATAGAAAGCACGACATAG
Protein Sequence: MLLLCALLGHKEVLLAHSKVTAHCEPITVILAEVEAPELAALLGFVYTGSATVPRMRLDAFLRAAEALRIRLPPVPGMTTCGEQAADCKLEDVKDVKVSPKYLQCDQYPWYRSKRLSYEEPYDRKESYIRIFHTDDVHRNVFRDIRALHEVNNPGPSFGAGCPSAWSPGSFSHQDRPTGDPSADKNHSSMILADKNSVIAPSNESSFSMYQRGTCLPGGPPAEGYAAGPDTLEKIRMGYERLHMSCPTEKPLMNEDVLAGGSEGESCGAARDECPYQSPIPLSSLQCATATVGQTTRSFEMLDYASQTSAGEDLSCGESCCRWRTARRHVANRVTASPWRQIVRPHHSPRTPRAILAIQRHTDDEIQKKSLAAEPIRSTVISMSPKNLVHSPKSAPRSDGVCPTAFEVPTSCETSFNNDLRLSREIIGDPEAKIQEIYRSPIPFTPSDQMTPPASARRNPSPRSNEQPLFQTVGSASTQSLSTGNNSVITNAGKSGYGSTQVPQTPQTKPELSHPISRLCDTIEADERKETPKTEVPPASAEKSGEERIARILVNSDSNNNNETIVSTEVTQRGRSADDHRCDQCGKTFVTRASLKVHSRTHSGEKPFRCADCGKQFSQLRNYKYHRSVHEGTREFAATCPECGKYFNDRGYLSSHMKIHRNRKEYGCAECGKSFNQRVAYNMHVRIHTGVKPHQCDQCGKAFSRKMLLKQHLRTHSGERPYQCQVCQKAFADRSNMTLHTRLHSGLKPYQCTLCSKAFTKKHHLKTHLNYHTGTKPYSCTNCGGRFSQSSNMRTHFKKCIVNNTSGMTAKSGDEGGTDRPDAESGIAPQVVLTPPNSDQESSILTPISKNAVAIESTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01523510;
90% Identity: iTF_01423848; iTF_01421736; iTF_01423793; iTF_01423108;
80% Identity: -