Basic Information

Insect: Tetramorium bicarinatum
Gene Symbol: -
Assembly: GCA_011636605.1
Location: VBVP01000907.1:11634-21027[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.7 2.3e+02 3.1 0.4 6 20 338 352 337 354 0.93

2 9 9.7e-07 0.00013 22.7 2.5 1 23 603 625 603 625 0.98

3 9 2.4e-05 0.0032 18.4 2.0 1 23 631 653 631 653 0.98

4 9 1.5e-06 0.0002 22.2 0.3 2 23 662 683 662 683 0.98

5 9 4.9e-05 0.0067 17.4 0.1 3 23 691 711 689 711 0.97

6 9 1.6e-07 2.2e-05 25.2 3.0 1 23 717 739 717 739 0.98

7 9 2.7e-06 0.00036 21.4 0.7 1 23 745 767 745 767 0.98

8 9 5.6e-05 0.0077 17.2 7.5 1 23 773 795 773 795 0.98

9 9 0.00031 0.043 14.8 1.4 1 21 801 821 801 822 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.7	2.3e+02	3.1	0.4	6	20	338	352	337	354	0.93
2	9	9.7e-07	0.00013	22.7	2.5	1	23	603	625	603	625	0.98
3	9	2.4e-05	0.0032	18.4	2.0	1	23	631	653	631	653	0.98
4	9	1.5e-06	0.0002	22.2	0.3	2	23	662	683	662	683	0.98
5	9	4.9e-05	0.0067	17.4	0.1	3	23	691	711	689	711	0.97
6	9	1.6e-07	2.2e-05	25.2	3.0	1	23	717	739	717	739	0.98
7	9	2.7e-06	0.00036	21.4	0.7	1	23	745	767	745	767	0.98
8	9	5.6e-05	0.0077	17.2	7.5	1	23	773	795	773	795	0.98
9	9	0.00031	0.043	14.8	1.4	1	21	801	821	801	822	0.94

Sequence Information

Coding Sequence: ATGCAGCACGATCTTCAAGCTTACAACAATGAAATGCTCGTAATTCATTGTTGTCCATGTTTCATTATCCGCGCGGGTAACGGCGGAAAGAAGAGTGAAAAAGTGTTACTGGCGCACAGCAAAGTCACCGCTCACTGCGAGCCGATCACGGTGATCCTGGCCGAGGTGGAGGCGCCGGAACTCGCGGCTCTTCTCGGATTCGTCTACACCGGAAGCGCCACGGTTCCGCGGATGCGGCTGGACGCCTTTCTGCGTGCAGCCGAGGCCCTGCGCATCCGGCTCCCGCCGGTGCCGGGGATGACGACCTGCGGCGAACAGGCGGCGAACTGCAAGCTGGAGGACGTTAAGGACGTCAAAGTTAGCCCCAAGTACCTGCAGTGCGATCAGTATCCTTGGTACCGATCAAAAAGATTATCCTACGAAGAACCGTACGACAGAAAAGAATCCTACATCAGAATATTCCATACGGACGACGTCCATAGAAATGTATTCAGGGACATCGGAGCGCTTCACGAGGTCAACAATCCTGGACCGTCGTTTGGTGCTGGCTGTCCGAGCGCGTGGTCGCCCGGCGGTTTCTCGCATCAGGACAGAGCAACGGGTGATCCTTCCGCGGACAAGAATCACGGTTCGATGATACTCGCCGACAAGAATCCGGTAATAGCTCCCAGTAACGAATCGTCCTTCAGCATGTATCAACGAGGCACGTGTCTCCCTGGTGGACCATCCGCGGAAGGATACGCTGCTGGTCCAGACACCTTGGAGAAGATCAGGATGGGATACGAGAGGTTGCACATGAGCTGCTCCACGGAGAAGCCGCTGATGAACGAGGACGTTCTCGCGGGAGGATCGGAGGGGGAGTCTTGCGGAACGGCGCGGGACGAGTGTCCCTACCAGAGCGCGATACCGTTGTCGTCCTTGCAGTGCGCCACCGCTACCGCCGGTCAGACGACGAGGTCATTCGAGATGCTCGATTACGCCTCGCAGACCTCGGCGGGCGAGGATCTTAGTTGCGGCGAAAGTTGTTGTAGGTGGAGAACCGCTCGCAGACACGTGGCGAATCGTGTCACCGCGTCGCCGTGGCGCCAGATTGTCAGGCCTCATCATTCACCAAGGACCCCGCGATCCATCCCCGCGGTCCAACGTCACACCGATGACGAAATCCAGAAAAAGCCTCTTGCTGCAGAACCAATCCGATCCACGGTAATATCAATGAGCCCGAAGAATCTCATTCATTCCTCGAAAAGCGCACCGCGAAATGACGGGATTTGTTCTACGGCCTTCGAAGTTCCTATCAGTTGCGAGACGAGTTTTAACAATGACTTGAGATTATCGCGCGAGATAATCGGTGGTCCGGAAGCGAAAATCCAAGAGATTTATCGATCGCCGATCCCATTCACGCCCTCTGATCAGATGACGCCGCCCGCGAGCGTACGGCGCAACTCCTCGCCGAGAAGCAACGAACAACCCCTCTTTCAGAATGTCGGCAGCGTGGCCACGCAATCACTGTCCTTGGGCAACGACAGCGTTATCACGAATGCCGGCAAAAGCGGATACGGATCGACGCAGGCGATTCCACAGATACCGCAGACGAAGCCCGAACTGTCTCATCCGATCAGCAGGCTCTGCGACACGATCGAGGCCGACGAGAGGAAGGAGACGTCGAAGACGGAAGTGCCGCCTGCGAACGTGGAGAAGAGCGGAGAGGAGAGGATCGCGAGAATTTTGGTTAACAGCGACAGTAACAATAACAACGAGACGATTGTGAGCACGGAAGTGACGCAGCGCGGACGATCGACGGACGATCACCGGTGCGATCAATGCGGAAAGACTTTCGTCACGAGAGCGTCGCTCAAGGTGCACAGCCGAACGCACTCCGGTGAAAAGCCGTTCCGCTGCGCCGACTGCGGCAAGCAGTTTTCGCAGCTGCGCAATTACAAGTACCATCGCAGCGTACATGAGGGCACGCGGGAGTTCGCCGCCACTTGTCCGGAATGCGGCAAGTACTTCAACGACCGCGGCTACCTGAGCTCGCACATGAAGATCCATCGGAACCGCAAGGAGTACGGCTGCGCGGAATGCGGGAAGAGCTTCAATCAGCGTGTGGCCTATAACATGCACGTGCGCATACACACGGGCGTGAAGCCGCACCAATGCGATCAGTGCGGAAAGGCGTTCTCGCGGAAGATGCTGCTCAAGCAGCACCTAAGAACTCATTCCGGCGAGCGGCCGTATCAGTGCCAGGTCTGCCAGAAGGCATTCGCCGACCGCTCCAACATGACCCTACACACTAGACTGCACTCCGGCTTGAAACCCTACCAGTGCACCCTATGCTCCAAGGCTTTCACCAAGAAGCATCACCTCAAGACCCACCTCAACTACCATACCGGTACCAAGCCCTACTCCTGCACCAATTGCGGCGGCAGGTTCTCACAGAGCAGCAACATGAGAACCCACTTCAAAAAGTGCATCGTCAACAATACTTCCGGAATGACGGCCAAGTCCGGCGATGAAGACGGCACCGATCGCCCCGACGCCGAGAGCGGCATTGCGCCGCAGGTGGTCTTGACCCCGCCCAATTCCGATCAGGAGTCCAGCATCCTGACACCAATCTCGAAGAACGCCGTCGCGATAGAAAGCACAACATAG
Protein Sequence: MQHDLQAYNNEMLVIHCCPCFIIRAGNGGKKSEKVLLAHSKVTAHCEPITVILAEVEAPELAALLGFVYTGSATVPRMRLDAFLRAAEALRIRLPPVPGMTTCGEQAANCKLEDVKDVKVSPKYLQCDQYPWYRSKRLSYEEPYDRKESYIRIFHTDDVHRNVFRDIGALHEVNNPGPSFGAGCPSAWSPGGFSHQDRATGDPSADKNHGSMILADKNPVIAPSNESSFSMYQRGTCLPGGPSAEGYAAGPDTLEKIRMGYERLHMSCSTEKPLMNEDVLAGGSEGESCGTARDECPYQSAIPLSSLQCATATAGQTTRSFEMLDYASQTSAGEDLSCGESCCRWRTARRHVANRVTASPWRQIVRPHHSPRTPRSIPAVQRHTDDEIQKKPLAAEPIRSTVISMSPKNLIHSSKSAPRNDGICSTAFEVPISCETSFNNDLRLSREIIGGPEAKIQEIYRSPIPFTPSDQMTPPASVRRNSSPRSNEQPLFQNVGSVATQSLSLGNDSVITNAGKSGYGSTQAIPQIPQTKPELSHPISRLCDTIEADERKETSKTEVPPANVEKSGEERIARILVNSDSNNNNETIVSTEVTQRGRSTDDHRCDQCGKTFVTRASLKVHSRTHSGEKPFRCADCGKQFSQLRNYKYHRSVHEGTREFAATCPECGKYFNDRGYLSSHMKIHRNRKEYGCAECGKSFNQRVAYNMHVRIHTGVKPHQCDQCGKAFSRKMLLKQHLRTHSGERPYQCQVCQKAFADRSNMTLHTRLHSGLKPYQCTLCSKAFTKKHHLKTHLNYHTGTKPYSCTNCGGRFSQSSNMRTHFKKCIVNNTSGMTAKSGDEDGTDRPDAESGIAPQVVLTPPNSDQESSILTPISKNAVAIESTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01523510;
90% Identity: iTF_01422406;
80% Identity: -