Basic Information

Gene Symbol
-
Assembly
GCA_011636585.1
Location
VBVO01005451.1:1-8406[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 32 6.8e-06 0.00085 20.2 1.0 1 23 184 206 184 206 0.98
2 32 0.0098 1.2 10.3 3.7 1 23 229 252 229 252 0.96
3 32 0.00066 0.083 14.0 0.5 2 23 259 281 258 281 0.96
4 32 0.035 4.4 8.5 0.1 1 21 301 321 301 322 0.95
5 32 0.0034 0.42 11.7 0.2 2 23 420 441 419 441 0.95
6 32 0.0068 0.85 10.8 0.5 2 23 448 470 447 470 0.91
7 32 0.0002 0.025 15.6 0.2 1 23 539 562 539 562 0.96
8 32 0.054 6.8 7.9 2.5 1 23 568 591 568 591 0.95
9 32 0.13 16 6.7 1.5 1 23 604 626 604 626 0.97
10 32 3.7e-05 0.0047 17.9 0.9 3 23 671 692 670 692 0.96
11 32 3.2 4e+02 2.4 0.4 1 23 724 747 724 747 0.92
12 32 0.005 0.63 11.2 0.8 2 23 754 777 753 777 0.94
13 32 0.97 1.2e+02 4.0 0.0 2 23 786 808 786 808 0.90
14 32 0.028 3.5 8.8 0.0 2 23 815 837 814 837 0.93
15 32 9.7e-05 0.012 16.6 3.2 1 23 845 867 845 867 0.97
16 32 0.02 2.5 9.3 0.8 2 23 903 926 902 926 0.94
17 32 0.00023 0.028 15.4 3.3 1 23 929 952 929 952 0.97
18 32 0.00075 0.093 13.8 0.1 2 23 959 981 958 981 0.96
19 32 0.00099 0.12 13.4 3.9 1 21 1008 1028 1008 1029 0.95
20 32 0.0029 0.36 11.9 1.8 2 23 1043 1064 1042 1065 0.93
21 32 0.39 48 5.3 1.1 1 23 1068 1091 1068 1091 0.94
22 32 0.029 3.6 8.8 2.1 2 23 1098 1121 1097 1121 0.90
23 32 3.3 4.1e+02 2.3 0.2 2 23 1129 1151 1129 1151 0.94
24 32 1.5 1.9e+02 3.4 0.0 2 23 1158 1180 1157 1180 0.91
25 32 0.24 31 5.9 2.7 2 23 1189 1211 1189 1211 0.96
26 32 0.75 93 4.4 0.5 2 23 1217 1239 1216 1239 0.91
27 32 0.018 2.3 9.4 0.1 1 23 1301 1324 1301 1324 0.95
28 32 0.00028 0.035 15.1 1.3 1 21 1351 1371 1351 1372 0.95
29 32 0.35 43 5.4 1.9 2 23 1473 1495 1472 1495 0.94
30 32 0.4 50 5.2 0.5 2 23 1502 1524 1501 1524 0.96
31 32 0.75 94 4.3 2.5 1 23 1535 1557 1535 1557 0.97
32 32 0.018 2.2 9.5 0.2 1 19 1561 1579 1561 1582 0.94

Sequence Information

Coding Sequence
ATAATGGAAGATGATTGTTTGCCAAAAGTCCTGTGTTATCGATGCATGTACAACTTGGAAAATTTCTATGACTTTAGGACTGCGTGTGTTAACGCAGCTGCTTGGTTGGAAAGAAATAGGCCGAAGGAAGGCGCGAGCGATGACGGTGCAAATGATAGCGCACAATCCGGCGAGGTGCACGCGGAGCTTCTTaaaggaaaggaaaatatGCCAGTACTTATTCCGGAGGCACCCATAGTCAATCCTAATGCGGCATTAGGTACACCCCCGAGATTAAATTCGGACGGTGAAGCAGATCCCGAGATCGAGGAGATTCTCGACACAAGTGAAGGTACGGATGAAGCTACAGTAATCGACGATTCGGAAGATCGACGATCGGAATACGAGATGGCATATGAGATGGACATGGAGACGAATCCCAGCGACTTTTTAGAAATGACTCCAATGGTAACTGAGGAAAATGAAGAGGAGTGCGGTATGAACAACACGAGCGCCGCGACCACTCAAGATACCGCGGTCTTTTCACATACGTCGCAACAACATGAAGTCTACGTTTGTTCTCTCTGCAACAAAGCGTTCAGTTCCAAAGGTCACTTATCCCTGCACGCGAGAATTCACGTGGGTGAGGGTGATGTGATTGGCGAAAGAGTAATCACCGACGACCATACTTCGTACCAACGACCGTATCAATGTGATCTTTGTCATAAATCATATTCCACTGCGAAACACCGCTGGGGACACGTTTCTACGACACATCGGGGACATCCTGCAGTAACGTGTGCATATTGTTCTCGCATATACTCGACGCGATATAATCTCGATGAGCATATAAAATCACGACACGCTGGTCTACCGCCACCTCCAGAATTATCGGTTCCCCTTTCGCGCACGGAAACTCGTTATCAGTGCCAAACATGTCTGATGGTGTACACGGATCTAGCAGATTTCAATGCGCATCGGCAGATATGCATCCAGGAACAACGTACAGATCTATTGGGGCAAACTGAAGCGCAAAACAATAAGATTTTCGCCGACACGTCCGATATCTCGAGCGTAGAGTCGGATGACGAGAACAAAGACTTCAAGAACGCCGAGGCTAAATTGGCGAAAAATCCACAATTAACTATATTGAAACAAGCGCTGACTAAAGGAGACAGTTTAAAACGAAATTTTGACGATGATGGCTCGACATCCAGCGGCAAGccgaaaaaaatagttaagtcagAGGGCGGCGAGACGAATTCTCAGAAGAAATGGTATTGTGAATCTTGTCCACAAAGTTTTACATCGGTGGATAGTTTGAAGGAACACGAGATTAGGCATGATGCCGAAAAGCCATTTATTTGCATACTATGCAAGAAAGATTTCGTTTTGAAATCTTCATTAATTAGGCATATTACAACATCACATGGCGTTGATCCTACTCCTATCGTTGACAGTGAAAAGTATTTAAAGGCAACAGTAATGCCTCAGAATTGGAACGATCGAGTGGACAATGTTTACGAGCAAAGTGAGATGAAGGAACCACCGGAGCTTTCATCGTCACCTGAgataaatttagaaaatgatgACAAAGATTACAAGAACCACGAGAATATAGAAATCGAAACCGTATTTGTATGTGAGACTTGTAAGAGAGATTTCAATGACCGAGCATCATTATGGCTACATATAAGAGCGATGCATAAAGAATACGCAGCATTTACCTGTGGAGTGTGTTTAAAGATGTGCTTTGATAACACGCAACTTCAAAATCATGTCTACATGTATCACGGAAGATCTAAGCTTTTAATATCGGAACAAAGAAGGTACAGTTGTACGATCTGCGGTAGACAGCATGACTCGAGGAAGAAGCTAATCACTCATGTCTCGATACATAACGTCGATCCTGCCTACGATCCTGCGAGTTTTGTacaattaaatagtaattattacaatgaaaaCTTGAATGGAAATGAAGGAAATGAACAAGTATTAGATTTTGACGGAGAAGATGGTGAGAAGGTTGATTGTTACATTTGTTACAAATCTTTTCCAACTGAGGACCATCTGATACGACATCAGAGAAATGCTCATAAGTCTGACCAGATAGTTTCATTAGATGCTACGGGTAGTGGCAATACTCTTAGTGTCAATGGTAATGGTAATAGAGCGCAGTATCATTTATTCTTTGTTTGCGAGGTATGTGGCAGTTCACATTCGAGTAAATGGGAACGCTGGTTGCATATCAACAATACACACAACAACGAATCTTCTATTAAATGCGAATGGGAGAATTGCGGAAAGATATTCGCGACGAAATCGTTGCGCAATGAGCATCTTCAGCATCACGCGGTACAAGGACCCTCGCCGAATACCTGCGAGATATGTGGGAAATTGTGGCCTACTCGCGTCGATTATTGGAAACACGTGATGGGCGTGCACGCGGACACAGTGCCTCTGATTTGTGGCGTTTGTCTGAAAGTATTTTCCGACGTAATGCAATTGAGCGCACACGTGAAGGCGAAACATTGGCCGCTGACCAGTGGTGATTTCTGTTGTGATATCTGCGGTAGACCGTACTCCAACAAGTCCAAGATGTCCCGGCATCGAAAGATTCATGGGTTGGAGGTTATGGACGCTGTATGCGATAACAGCAGTTTCAATGAAACGACTAATGAATCGGTCAAGCCTGATCACAACAATGGCGCATCGGAAATAGAATTGAGTTGCGACCAGTGCCCGGAACTCAGCTTCACCACCTTGGACAGCTTGTGTAATCATCGACGGATAGCACACAATCTTTTCCCGTGCGACTTGTGCAACAAATGTTACGGCAGGACGTCGCACTTGTGGAAGCATGTGAATAGGGTGCACAAGGGACACGCGGATGTGACGTGTCCCTACTGCGCCAAGACAAGTGCGTCAAGGGATCATCTGGCAGCGCATATCGCCAAGATTCATAGATATCTACCAGCAATAGGTAAGGATAATCAGAACTGTGTCGCTTCCAAGTCGCTAAATGTCGAAGACGATGTGTTGCATTATTGCGAGAAATGTAACAAGGGATTCCACAAGCGCTATTTGCTCCGTCGTCACATGAAAGGTTGTCAAAATTATCGTAAAGATCCTGGTGCGTTGTTGACTCGTTGCCGGGCCTGCGAGAGGATATTCAAGGATCGTGCAAGCCTGCAAAAGCACATTGAGAATCACCATAGCACGTATACTTGTCACTTGTGTAATGAAACGATCACTTCCAAGCTAGGTATCATGACACACAACCGCGTCAATCATATGGATCATCCGGACTTGACGTGCGACCATCCGAGTTGTAAAAAACTCTTCCGTACTAAAGAAGATTTGGAATCTCATCGAAAGGATCACAAGTATCATAGCAACCCGAACGTTTGTGACTTTTGCGGTGACACCGTGGAAAATAAGTTGAAACTGAAGATGCACGTATTGTCGTTGCATCGTAACGAGATCGGCGTCTCCTGCGGTGTTTGCCTCATTCCTATGAAGGACCCCAAAGACTTGAAGAAACACGTCGAGTCGGAGCACAGCAGCGTTCTTTCCAATCCAAACACGTGTCAGGTGTGCGGCAAGCAATATGCATCCAAGTGGAAGGCCTTTGATCACACGAAGAAATGTCACGGCAAGGTCTTCCTCACGTGCAAACAATGTCTAGCGGTTTTCACGGATGAAAACGATATACGTGATCATTACGAACACGTGCACAACGTTCCAAAGGATCAATTAGCCGTTTTCGAATATAGAATGGATATTGGTGCAAAGAGAGAAGGTTACGAAACTCCCGATATTATTGTCAAGGAGGAACCGGATGACATGGAATTCGACGAGGAGCTATGTGACGAGAGTTCGAACGACTCTCGTAAACGTAGAAGATCGCCAAATGACACGTACGATTGCGAGATGTGTCCCGAGATCTTTCTCAATTCAGACACTCTTGCCAAGCATTATCAGAACGTTCATAACACCGACCCCGTCCGTATGTTCAAGAAATTCAAAAAGGATAGCGACAGCAAACGCAAGATGAGAAATAGAAACAACTTTGAGTGTAAGAATTGCAAGAAGCAGTTCTCTACCAAGACCCTATTCTGGAATCACATCAATTTATGTACACGACGAAACTCGATAGGTAGATTTGACATGCCGAATAATGTTTCTACGTCAATTCTGGAGTCCcatctgaaaaataataatcagatTCCACGAGAAGAACCGCTACCGCTGACGAATGAATCCAACTTGAACATTCCCGATTTCAATCTATTCGAAGACATTAATATGCAATTGTCAGCCCAGAAACCTGTGCCGAATCTTATGCCGTTGTCGCAGATGAAGGCGACGGGTAACGGCAAGTGCTCGAGAAAAGACTCGCGCAAAGTGTACGACGAGTCGACCAATACCGAGTGCACGTGCGAAGTCTGCGGTAAGCAATGGCCCGCCAAAAAACATTTGTGGCAACACCTGATTCGTTTCCATCGCGCCGAAGCTGCCGTTACATGTGGCGTATGCTTGAAGCTATGTAAATCGTATCAAGATCTGGCCGATCACTTGAAGGTCGAGCATGCCCCTGTCTTGTCGCCAGAGGGTAACAATTTCACTTGTAAGACATGCGGTAGATACCACAACGCGAGAAGCAAACTGTTGTTGCACATGAGTATTCATATCGGGAACTTCCAGTGTCAAAAGTGCCAGCAAGGTTTTGCGAGCGAGGAAAAACTCAACGAGCACGCAACGAGTTGCAATGGTAAGGAGTTTGATGATCACGCGGTGGCGGACGAAGATAATGCAAAGAACGACAATGATGAGAAGGGCAGCTTGATCGCCGACGAAACATCGGTCATCGAGGAAGCGGAAGAAGCGGAGGAAGCGGATTTCGAGTCGGAAGGTGAAGAGAGTAGAGATATCCATGAAGACAATTCGGAAAATAGCGAAGGAGACAATTCGGAAAATAGCGATGATTCGGATAGCGACAGTAATAGTAGTTCGAGCGAGGATGAGAACGAgaacgaagaagaagaggaagaggaaaatgaaaatgaaaatgaaaacgaAAATGACAATGAAAATGAGTCTGATACAAGAACCACTAGTAGAGAAACCGGTGATAGTGTGTCGTGTAATTCTGAGAGCGACGATGACGAATCGGATATGGATGAAACGGAAGTGACGGAAAAGAAAGCGCTACAATTGAGTGATATCGGTAGATTTAGAATACGCGGTGACAGTAATCAAGAGAATGTCAAGAACCAGAAAACTGATTTTACGTCCTTTACCGCAGCGACAACGGTTGCAGAACAAGCTaaacaaagtaatttaaatgatCTTTTGATTGCCACAGCATCTGCGAACATGGACAAATTTGAAGCATTTCGTCTCGAGGGATCCGCTAAAGCTGCGACGAGCGACGTAGACTTGTctgatgacgatgatgatgatgatgaagatgaagaagaagaagaagaagacgatgGTGATAACGAAGAGGAAAATAACGATGAGGAAAATAATGAGaatgaaaaggaagaagacGGTGAGGAAGATAATGATGAGAATGAAGATGAAGATGAAGCTGAAGCTGAAGCTGAAGCTGAAGCTGAGGCTGAGTCTGAGTCTGAGTCTGAGTCTGAGTCTGAAGCTGAAGCTGAAGCTGAAGCTGAAGCTGAAGCTGAAGCTGAAGCTGAAGCTGAAAGTGAGAATGACAATGAGGATGAAGATGAGGATGAAGCCGCAGCCGAGGAAGAGGCGGAGGAGGagggagaagaagaggaagaggatgATGAAGACGATGATGATGGACCGCCTGTGTTAAGTCCAATAATGCCTTTGTTACCAGAAAACGAATCTGAAGAGCACAGCGGCACGATAGATCGCACGAGACACAAGCTCAGTCCGATGGTTTCCTTGAGTATGACTAAAGATCTGGCGGAATGCGAAATAACTGAAACGCCAAATGACGTTGAGAACGTGTCGAACGCAGCCAACCTCTTCGCGGCTAATAACAATGATTTGCCCGTAACGTGGGATGAGAACTTGGATGACAACGGAATCGACAATGGCGATTGCAACTCCGACATGGAAGACAGGGATGTGGAGAAAAACGAAGAGTTCAATAAGGAATATAATATGGAAGTAAACGAGGGTGATGACTTTGAAGAGGATTCCGCGTATGAGAACGTAGTGGATAATAGTAGAGAAGGTGATGGAGACAATCAAGTGCACGAAGTGCATAATCTGGACGGTACTGTGTTAATGGTGGCTAATGACGCGGAAGGTAATCACATTTTGATAGAACAGAACGTGTTAGATATCGATAATGAGGACTCTAATGTCGAAGCGGCGCAGTATATTTACCCAGAGACCGCTTACGAGATCGAAGAAGAGGATTACACGATGCGAAACGAGAGTGACATCATGCAAACGGATGAGGTGCAAGGTAGTATGTCCTATGTTCAAGATACATCGGAAAATGAGGATAGCACGGAGGGTGACGTCGAGGAGAACAGTAGTGACGTGCAGAAACAGTAG
Protein Sequence
IMEDDCLPKVLCYRCMYNLENFYDFRTACVNAAAWLERNRPKEGASDDGANDSAQSGEVHAELLKGKENMPVLIPEAPIVNPNAALGTPPRLNSDGEADPEIEEILDTSEGTDEATVIDDSEDRRSEYEMAYEMDMETNPSDFLEMTPMVTEENEEECGMNNTSAATTQDTAVFSHTSQQHEVYVCSLCNKAFSSKGHLSLHARIHVGEGDVIGERVITDDHTSYQRPYQCDLCHKSYSTAKHRWGHVSTTHRGHPAVTCAYCSRIYSTRYNLDEHIKSRHAGLPPPPELSVPLSRTETRYQCQTCLMVYTDLADFNAHRQICIQEQRTDLLGQTEAQNNKIFADTSDISSVESDDENKDFKNAEAKLAKNPQLTILKQALTKGDSLKRNFDDDGSTSSGKPKKIVKSEGGETNSQKKWYCESCPQSFTSVDSLKEHEIRHDAEKPFICILCKKDFVLKSSLIRHITTSHGVDPTPIVDSEKYLKATVMPQNWNDRVDNVYEQSEMKEPPELSSSPEINLENDDKDYKNHENIEIETVFVCETCKRDFNDRASLWLHIRAMHKEYAAFTCGVCLKMCFDNTQLQNHVYMYHGRSKLLISEQRRYSCTICGRQHDSRKKLITHVSIHNVDPAYDPASFVQLNSNYYNENLNGNEGNEQVLDFDGEDGEKVDCYICYKSFPTEDHLIRHQRNAHKSDQIVSLDATGSGNTLSVNGNGNRAQYHLFFVCEVCGSSHSSKWERWLHINNTHNNESSIKCEWENCGKIFATKSLRNEHLQHHAVQGPSPNTCEICGKLWPTRVDYWKHVMGVHADTVPLICGVCLKVFSDVMQLSAHVKAKHWPLTSGDFCCDICGRPYSNKSKMSRHRKIHGLEVMDAVCDNSSFNETTNESVKPDHNNGASEIELSCDQCPELSFTTLDSLCNHRRIAHNLFPCDLCNKCYGRTSHLWKHVNRVHKGHADVTCPYCAKTSASRDHLAAHIAKIHRYLPAIGKDNQNCVASKSLNVEDDVLHYCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCNETITSKLGIMTHNRVNHMDHPDLTCDHPSCKKLFRTKEDLESHRKDHKYHSNPNVCDFCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVESEHSSVLSNPNTCQVCGKQYASKWKAFDHTKKCHGKVFLTCKQCLAVFTDENDIRDHYEHVHNVPKDQLAVFEYRMDIGAKREGYETPDIIVKEEPDDMEFDEELCDESSNDSRKRRRSPNDTYDCEMCPEIFLNSDTLAKHYQNVHNTDPVRMFKKFKKDSDSKRKMRNRNNFECKNCKKQFSTKTLFWNHINLCTRRNSIGRFDMPNNVSTSILESHLKNNNQIPREEPLPLTNESNLNIPDFNLFEDINMQLSAQKPVPNLMPLSQMKATGNGKCSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKSYQDLADHLKVEHAPVLSPEGNNFTCKTCGRYHNARSKLLLHMSIHIGNFQCQKCQQGFASEEKLNEHATSCNGKEFDDHAVADEDNAKNDNDEKGSLIADETSVIEEAEEAEEADFESEGEESRDIHEDNSENSEGDNSENSDDSDSDSNSSSSEDENENEEEEEEENENENENENDNENESDTRTTSRETGDSVSCNSESDDDESDMDETEVTEKKALQLSDIGRFRIRGDSNQENVKNQKTDFTSFTAATTVAEQAKQSNLNDLLIATASANMDKFEAFRLEGSAKAATSDVDLSDDDDDDDEDEEEEEEDDGDNEEENNDEENNENEKEEDGEEDNDENEDEDEAEAEAEAEAEAESESESESESEAEAEAEAEAEAEAEAEAESENDNEDEDEDEAAAEEEAEEEGEEEEEDDEDDDDGPPVLSPIMPLLPENESEEHSGTIDRTRHKLSPMVSLSMTKDLAECEITETPNDVENVSNAANLFAANNNDLPVTWDENLDDNGIDNGDCNSDMEDRDVEKNEEFNKEYNMEVNEGDDFEEDSAYENVVDNSREGDGDNQVHEVHNLDGTVLMVANDAEGNHILIEQNVLDIDNEDSNVEAAQYIYPETAYEIEEEDYTMRNESDIMQTDEVQGSMSYVQDTSENEDSTEGDVEENSSDVQKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01355612;
90% Identity
iTF_01423087;
80% Identity
-