Basic Information

Insect: Tetramorium immigrans
Gene Symbol: Gzf1
Assembly: GCA_011636585.1
Location: VBVO01003200.1:1168-4856[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.0048 0.61 11.2 3.8 1 23 23 46 23 46 0.96

2 19 1.1e-05 0.0014 19.6 0.5 1 23 52 74 52 74 0.97

3 19 0.0038 0.47 11.6 4.4 1 23 80 102 80 102 0.98

4 19 0.00058 0.073 14.1 2.8 1 23 108 130 108 130 0.98

5 19 8.8e-05 0.011 16.7 2.6 1 23 175 198 175 198 0.95

6 19 0.35 44 5.4 0.6 3 23 209 229 207 229 0.95

7 19 1.4e-07 1.7e-05 25.5 1.8 1 23 235 257 235 257 0.98

8 19 3.2e-06 0.0004 21.2 1.1 1 23 263 285 263 285 0.97

9 19 1.1e-07 1.4e-05 25.8 0.9 1 23 291 313 291 313 0.99

10 19 0.44 55 5.1 0.4 3 23 346 367 345 367 0.96

11 19 8.4e-05 0.01 16.8 1.0 1 23 373 396 373 396 0.97

12 19 0.64 80 4.6 0.2 2 23 402 424 401 424 0.95

13 19 2e-05 0.0025 18.7 0.3 1 23 430 452 430 452 0.98

14 19 0.06 7.6 7.8 0.8 2 23 459 481 458 481 0.94

15 19 1.4e-05 0.0017 19.3 2.0 1 23 501 524 501 524 0.93

16 19 0.0021 0.26 12.4 0.1 1 23 535 557 535 557 0.95

17 19 0.0081 1 10.5 3.6 1 23 563 585 563 585 0.94

18 19 5e-07 6.3e-05 23.8 1.1 1 23 591 613 591 613 0.98

19 19 2.3e-06 0.00029 21.7 1.4 1 23 619 642 619 642 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.0048	0.61	11.2	3.8	1	23	23	46	23	46	0.96
2	19	1.1e-05	0.0014	19.6	0.5	1	23	52	74	52	74	0.97
3	19	0.0038	0.47	11.6	4.4	1	23	80	102	80	102	0.98
4	19	0.00058	0.073	14.1	2.8	1	23	108	130	108	130	0.98
5	19	8.8e-05	0.011	16.7	2.6	1	23	175	198	175	198	0.95
6	19	0.35	44	5.4	0.6	3	23	209	229	207	229	0.95
7	19	1.4e-07	1.7e-05	25.5	1.8	1	23	235	257	235	257	0.98
8	19	3.2e-06	0.0004	21.2	1.1	1	23	263	285	263	285	0.97
9	19	1.1e-07	1.4e-05	25.8	0.9	1	23	291	313	291	313	0.99
10	19	0.44	55	5.1	0.4	3	23	346	367	345	367	0.96
11	19	8.4e-05	0.01	16.8	1.0	1	23	373	396	373	396	0.97
12	19	0.64	80	4.6	0.2	2	23	402	424	401	424	0.95
13	19	2e-05	0.0025	18.7	0.3	1	23	430	452	430	452	0.98
14	19	0.06	7.6	7.8	0.8	2	23	459	481	458	481	0.94
15	19	1.4e-05	0.0017	19.3	2.0	1	23	501	524	501	524	0.93
16	19	0.0021	0.26	12.4	0.1	1	23	535	557	535	557	0.95
17	19	0.0081	1	10.5	3.6	1	23	563	585	563	585	0.94
18	19	5e-07	6.3e-05	23.8	1.1	1	23	591	613	591	613	0.98
19	19	2.3e-06	0.00029	21.7	1.4	1	23	619	642	619	642	0.98

Sequence Information

Coding Sequence: atgttAACATATCCATTTGAAGACAAGTGGAGAAAAGGGCAACGACGGGGTAGATCGCGTGCTGTGCACCAATGCGTCAAATGCGGGGCACGCTTCCGTCATACACGGAAGCTCGTGGAGCACTTGAAGAATTTGCACAATATCGACCGGGCGTTCAGCTGCGACGAGTGCAACAAGACATTTCGCAGCCCTATGAATATAGCTCGTCACAAACTGATCCACACGGGGTTGAGAATGTTCACCTGCGATCTCTGCGAATACAGTACCAATCAGAAGTCCAATCTGGAATGCCATCGTCGGCGGCACGCCAAGGACTATAGCTTCAAGTGCGAGACGTGTGACAAGGGCTTCTTCCACAGGACCGAGTACCTGGAACACCAAAACGCCCACACGAACAAGAGTCTGTATCGTTGCGAGCACTGTTGCAAGCATTACCTGTACAAGAAGAACCTATCGGTGCACCTGGTGATGCATCATGCCGGCAAACAGACCGCCGCAGCTGCGAGGAACGCGAGGACGAGGCACGCGTGCAAGTTCTGCCCGGAGAGATTCGTGTACAAGAGGCTGCTGGAAAGGCACATGAAGAATCAGCACGGATTCGCGGACGCGCCGGCGAAGCACCTGTGTGACCTGTGCGGCGCGGAACTGTCATCGATGAGACGACTAATAGTGCACAAACGCAATCACGCGGGCGAGAAGATTTTCGAGTGCGACACGTGCGACAAGAGGTTCACCAGCAAGGAGAACCTGATGATCCACAAGCGGACGCACACGGGCGACAAACCGCACGTGTGCCCGCAATGCGGCCGCGGCTTCACGCAGAGGACATCCCTGGTCCTGCATCTGCGATATCATTCGGGTCAGAGGCCTTACCAGTGCCAGGATTGCGGCAAGGGATTCGTGTCCAACACCTTGCTCAAGAGGCATCGCAAGGTGCATGAGAAGGCCGCCCAGTGGACGAATAATCACGATTTGAAGGTGAAGAACGAGGATCTGCCTGATCTTGGACAGAAATTCGAAGGTGGCGAGAAGATCTGTGAGCTATGCCAGGCGAAATTCCACTTTGTTACTAGACTGGTCGCGCATCTGAGGATAGCGCACGGCATCCTGCGGCCTTTTAAGTGCGTCACTTGCGACAAGAATTATCCTCAGCAGTTCATGTTAAATGCCCACGTGAAGAAGTCACACACACCGAAAACCGTGCCGTGTACCCAGTGCAACTTTATGGGTGTCAACGTGATCGACGTGGAGAAACACAGACGGCGACGTCACCGAGCCCTACCGAAATTCACATGCGAGATTTGCAGCCAGGATTTTGCCGATAAGGACTCTCTGACCGCGCACACGACGATGCACGATTTCATGCAATATCAACAATGCAACGCATGCGGTAGTATCTTCATTGATATGCACAGCTTAAAGGAACACAATCGTCTTTACCACTACGATCCTGCAACGGATGGGAAGTTGTTCGAGGAGTCCAGCGAGAACGGATCCGAGCACAAATGCGACGTTTGCGGCAAGGTCTACAAATATAGTTCAATGTTGAAGCAGCACAAGGTCAGAGTTCACGATGACCCGTCGAACTACGAAAGATGCAGGTATCTTTGCGCACTGTGCGGCAAAGAATTGAAGACCGCGAAGGGCCTCGAAATCCACAACAGATCGCACACCGGCGAAAAGCCGTATACGTGCGAAGTGTGCGGCAAGTGTTTCGCCTGTGAGACCCTGTTGAGAACTCACAATGTCACCCATACCGGCGAACGGAAATATTCGTGCGACCAATGCGGCAAGGCTTTTACGCAAAGGTCCACTCTAGTTGTTCACAAGCGATATCACACGGGCGAACGACCGTACGTTTGTCCTCAGTGCGGAAAGGGTTTCGTCACGCGAACTGTCCTTAATACTCACATGAAGTCTTGTCATTGA
Protein Sequence: MLTYPFEDKWRKGQRRGRSRAVHQCVKCGARFRHTRKLVEHLKNLHNIDRAFSCDECNKTFRSPMNIARHKLIHTGLRMFTCDLCEYSTNQKSNLECHRRRHAKDYSFKCETCDKGFFHRTEYLEHQNAHTNKSLYRCEHCCKHYLYKKNLSVHLVMHHAGKQTAAAARNARTRHACKFCPERFVYKRLLERHMKNQHGFADAPAKHLCDLCGAELSSMRRLIVHKRNHAGEKIFECDTCDKRFTSKENLMIHKRTHTGDKPHVCPQCGRGFTQRTSLVLHLRYHSGQRPYQCQDCGKGFVSNTLLKRHRKVHEKAAQWTNNHDLKVKNEDLPDLGQKFEGGEKICELCQAKFHFVTRLVAHLRIAHGILRPFKCVTCDKNYPQQFMLNAHVKKSHTPKTVPCTQCNFMGVNVIDVEKHRRRRHRALPKFTCEICSQDFADKDSLTAHTTMHDFMQYQQCNACGSIFIDMHSLKEHNRLYHYDPATDGKLFEESSENGSEHKCDVCGKVYKYSSMLKQHKVRVHDDPSNYERCRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCPQCGKGFVTRTVLNTHMKSCH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00869051;
90% Identity: iTF_01409381;
80% Identity: -