Timm014019.1
Basic Information
- Insect
- Tetramorium immigrans
- Gene Symbol
- Hr39
- Assembly
- GCA_011636585.1
- Location
- VBVO01009685.1:1-2665[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.19 1.7e+03 -1.3 4.1 80 163 59 140 21 153 0.59 2 4 3 2.7e+04 -7.1 9.6 76 147 181 256 147 285 0.41 3 4 4.4e-08 0.0004 20.5 0.0 1 21 352 372 352 377 0.92 4 4 4.7e-71 4.2e-67 227.9 0.0 182 408 521 741 465 741 0.92
Sequence Information
- Coding Sequence
- gACCACAATGAGGAAACGTCTATGGAGGGAGTTCAAGTATGCAGCACGAGCCCCGGACCAATGGAACAGAAGTTTCCTATTAAATCGGAGCCGGATTTTCGATCTAGCCCAGGTTTCACAATAGGATCCTTTCACGATGGTGGATTGCCCATGACACACAATCAACAGctgcagcaacagcaacagcagcaacgcGGTATTGAAAACCTCGAACAAACTCAACAGAGCGACCTACCGCTTCTCGTAGGCAAGCTTCTCGGCGGATACAACAACTCGACGCCTAATCACAGTCCTGTTCTCAATCCGCGACATCATCTAACTAAACACAGTCATACTAGATCACAGGTGCCGTCACCAGATTCCGCCATTCATTCTGCGTATAGTGTCTTCAGTTCACCGACCCAGAGCCCTCACGCGGCACGACATTCCGCCCTAGGAGCGGGAAGTCCGATACCCTCCTCGTCGCTGTCCCTCTCTCGACACAGCTTCAACAATTCGACTTCCTCGTTATCCCTATCGTTATCGCACTCGCTTTCGAGAAACAATTCCGACGCTTCTAGTAGCTGCTACAGCTACGGCTCGCTTAGCCCGCCTACACATTCACCCGTCCAGCAGTCGAGACATCCGCATTCGCACTCGCAACATCATCAGCATCAAGTGGCGCAAGGTAGTCCGCTGCATCTACCAGCCTCATCCGCAGTAGCCGCACATCATTATTCCTCCTCTTCCGTACCAGGGGCGGAATTGTCGCCGGACGGCCATCCCGTCGCGGAGGATCAGGAAGACTGCAGGATACCCTCAGCGCCGTCGGGTATCTCCACCAGGCAACAACTAATAAACAGTCCCTGCCCGATTTGCGGCGACAAGATAAGCGGTTTCCATTACGGCATCTTCTCGTGTGAATCGTGCAAGGGATTCTTCAAGCGCACCGTCCAGAATCGCAAGAACTATGTGTGCCTTAGAGGCGCAGGCTGCCCGGTCACCGTGGCCACGAGGAAGAAGTGCCCGGCCTGCCGCTTCGACAAGTGCCTCAACATGGGTATGAAACTCGAGGCGATCAGGGAGGATCGTACCAGAGGCGGTAGAAGCACTTATCAATGTACCTACACTCTACCGGCAAATCTCGTTGGTAGTCCTGCCGGTGGTATGACCGGTGAGAAACTGACAACGGCGGGCAATTGCAGCCCGGCACCGGCCGGTAGCGAACACCATTATTCCGTTAGATATCATTCGAATCATTCTCATAAGATGCAAGTGGTACCTCAACTGTTGCAAGACATCATGGATGTGGAACATCTTTGGCATTACAACGATAACGATCGGATGAGCGGTAGTGGTGGGGTACTCGGAAGTGCAAGGAACAACAGTGGTGACAGTATGCTACTCGGTGGATCCGGAAGTGGTCTGACGCCCAGCGGTATTGTAACCGCGACCGGAAACAACGGAGGTGCAGTGGAATGTTCGTCTAATGACTCTAGCAACGTCGATACTAATAGTAGAAGAGGAGAGACGGCGAGCCCTGCCGGCTCGAACTCAACGGGGACGTCTGATCAACATTCCACAAACGGCAATATCACCAACAATAGTAATTCTCAAATCACCAATAATTCCAATGGCAATTCGGCGCAGCATCCGGACTTTCTATCTAATCTGTGCAACATTGCGGATCATCGGCTTTACAAGATCGTCAAGTGGTGCAAAAGTCTcccattatttaaaaatatctcgatcGACGATCAAATCTGTTTGTTGATCAATTCTTGGTGCGAGCTATTACTTTTCTCTTGCTGTTTTCGCAGCATGAGTACTCCCGGTGAGATAAGAGTGTCTCTTGGCAAGTCGATTACTCTAGAACAAGCAAGGCAGCTTGGTTTAGCGACTTGCATCGAGAGGATGCTCGCTTTTACCAACAATCTGCGAAGACTGAGAGTAGACCAATACGAATACGTTGCAATGAAGGTGATCGTGCTGTTAACGTCCGATACAAGCGAATTAAAGGAACCTGAGAAGGTCAGAGCTTCTCAGGAAAAAGCCCTTCAAGCACTGCAGCAATATACAATCGCAAGGTATCCAGAAATGCCTGCCAAATTCGGTGAACTATTGTTGAGAATTCCAGATCTGCAAAGAACATGTCAAGCAGGAAAAGAATTGCTCAGTGCAAAACGCGCCGAGGGAGAAGGCAGCTCGTTTAACCTTTTAATGGAATTGTTGAGAGGAGATCACTGA
- Protein Sequence
- DHNEETSMEGVQVCSTSPGPMEQKFPIKSEPDFRSSPGFTIGSFHDGGLPMTHNQQLQQQQQQQRGIENLEQTQQSDLPLLVGKLLGGYNNSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPIPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQSRHPHSHSQHHQHQVAQGSPLHLPASSAVAAHHYSSSSVPGAELSPDGHPVAEDQEDCRIPSAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLVGSPAGGMTGEKLTTAGNCSPAPAGSEHHYSVRYHSNHSHKMQVVPQLLQDIMDVEHLWHYNDNDRMSGSGGVLGSARNNSGDSMLLGGSGSGLTPSGIVTATGNNGGAVECSSNDSSNVDTNSRRGETASPAGSNSTGTSDQHSTNGNITNNSNSQITNNSNGNSAQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01422297;
- 90% Identity
- iTF_01422297;
- 80% Identity
- iTF_01422297;