Timm019566.1
Basic Information
- Insect
- Tetramorium immigrans
- Gene Symbol
- prd
- Assembly
- GCA_011636585.1
- Location
- VBVO01000035.1:111387-113294[+]
Transcription Factor Domain
- TF Family
- PAX
- Domain
- PAX domain
- PFAM
- PF00292
- TF Group
- Helix-turn-helix
- Description
- The paired domain, a ~126 amino acid DNA-binding domain, is found in eukaryotic transcription regulatory proteins involved in embryogenesis. Initially identified in Drosophila’s paired (prd) protein, it typically resides in the N-terminal region and may be followed by an octapeptide, a homeodomain, or a Pro-Ser-Thr-rich C terminus. Paired domain proteins act as transcription repressors or activators, with DNA-binding specificity mediated by three subdomains. Crystal structures reveal a bipartite DNA-binding paired domain: an N-terminal subdomain (PAI) and a C-terminal subdomain (RED), linked by a flexible linker. Both subdomains contain a helix-turn-helix motif that binds DNA's major groove, while the linker may bind the minor groove. Variations in domain usage across Pax proteins and isoforms determine sequence specificity.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.8e-75 1e-71 239.3 0.8 1 125 20 144 20 144 0.99 2 2 2 4.1e+03 -1.8 0.0 16 63 185 235 175 240 0.56
Sequence Information
- Coding Sequence
- ATGGAAACGATAAATGGAGGAAGTGTACCGCTTGTTCCAGACATAGGATCTATACCGGGTCAGGGGCGTGTAAACCAGCTTGGTGGAATCTTCATCAACGGACGACCACTGCCTAATCACATTAGATTGAAGATTGTCGAGATGGCCGCTGCGGGGGTCAGGCCGTGCGTTATATCGAGGCAATTGCGGGTGTCCCATGGATGCGTGTCGAAGATTTTAAATCGCTATCAGGAAACTGGTAGCATCAGACCTGGAGTTATCGGCGGCAGCAAACCACGAGTGGCCACGCCGGAAGTGGAGGCGAGAATCGAGGAGTACAAGCGCGACAACCCGGGTATGTTCTCATGGGAAATCAGAGATCGACTGATCAAAGAGGGCATCTGCGAACGGACCAGCGCACCGAGTGTGTCCGCGATTTCTCGACTACTCAGGGGTCGCGATTCCGAAGACGACGTTAAACTAGGTGACGGTGAGAAGTCTCACAATTGCTACACTGCTACACAAATAATCATTAGTGTAGCAAGTAAAAAATCTGTAGTATTAGGCAGACTTCGGAAATTAACTCATATTTTAAGGCATAAAATAGCTTATCTCTCTCGTGTCATTGAATCGCCTCGATACAAAGACTCGCTTTACGAgttctttgaaatttcttcGATCTGCCACGCTAATGGCGGCGGCAGGTTTCTCGAGCGGGTGTCCATCGGCCCTCTCGGCTGCCCGAGTTTCTTCCCGCGTCCTAACAGAGATTGA
- Protein Sequence
- METINGGSVPLVPDIGSIPGQGRVNQLGGIFINGRPLPNHIRLKIVEMAAAGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPEVEARIEEYKRDNPGMFSWEIRDRLIKEGICERTSAPSVSAISRLLRGRDSEDDVKLGDGEKSHNCYTATQIIISVASKKSVVLGRLRKLTHILRHKIAYLSRVIESPRYKDSLYEFFEISSICHANGGGRFLERVSIGPLGCPSFFPRPNRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -