Tbic005572.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tetramorium bicarinatum
Gene Symbol
nfxl1
Assembly
GCA_011636605.1
Location
VBVP01001259.1:36505-40014[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 1.1 1.4e+04 -3.3 1.1 15 19 126 130 125 130 0.81
2 17 0.49 6.6e+03 -2.2 0.7 4 10 161 167 161 167 0.92
3 17 5.6e-08 0.00075 20.0 15.1 1 18 175 191 175 192 0.98
4 17 3.6e-07 0.0048 17.4 9.9 2 18 230 245 229 246 0.92
5 17 1.5 2.1e+04 -3.7 1.7 6 10 271 275 271 275 0.93
6 17 1.5e-05 0.2 12.3 12.3 1 19 281 300 281 300 0.93
7 17 9.8e-05 1.3 9.7 7.5 1 18 336 353 336 354 0.97
8 17 0.0021 28 5.4 7.0 1 12 388 399 388 399 0.94
9 17 1.2 1.6e+04 -3.4 1.4 6 10 409 413 408 413 0.88
10 17 9.1e-08 0.0012 19.4 12.9 1 19 419 437 419 437 0.91
11 17 0.00011 1.4 9.6 9.8 9 19 485 495 483 495 0.90
12 17 0.0019 25 5.6 7.4 1 12 505 515 505 515 0.95
13 17 0.87 1.2e+04 -3.0 5.8 14 18 547 551 547 552 0.89
14 17 0.00016 2.1 9.0 4.8 1 12 588 599 578 599 0.81
15 17 2 2.7e+04 -4.7 2.5 14 18 616 620 616 625 0.61
16 17 0.00048 6.3 7.5 18.9 4 19 634 649 631 649 0.94
17 17 0.0025 33 5.2 14.8 1 16 694 708 694 714 0.93

Sequence Information

Coding Sequence
ATGCAGAAATTCAAGAGAGCTCAAGCCCAGAATAAGCTGTCCATCGAAAGGCACTTGGAAGCCAACGCATCGTTGAACTCGTCTAGCGAAGAGGAGGATGAAACAAATGAGGAGGATGTCCAAAATGTAGTGGGCAAAATATTGTCGGCATACCAGGGACAGAACACAGATACGGAGAAAGTGATTTCGTACCTGGTTAATTCCTTTCAGACCAGCAGCGCTGTTTGCTTGATATGCATATCAACTATCAAAAAGATGGATCCAATATGGAACTGCGACAAATGCTATGCATTTCTACACATGTCCTGCATTCTACACTGGATCAACGACAGTTTGAGTTACAAACGGGCTAAAGGAATCACCCCGATCTGGGCGTGTCCAAAATGCCGTATGGAATACGATCAGGATCAGATTCCACGATCGTACAAATGCTTCTGTAAGAAGACCGTGGATCCTCTGCCTCAACCCTGGGTTATTCCCCATTCTTGCGGCGAAAGCTGCGGCAAGCTTCTGCAACCAGAGTGCGGTCACAAATGCGTGTTGCTCTGCCATCCTGGTCCGTGTCCACCTTGCGCCAAGATGGTGTCGGTTAAGTGCTACTGCGGGAAGCTGCCGGCGCAGCCGCGACGTTGCAACGCCAAAAACTGGAGCTGCGGGACTGTGTGCAACAAAAAATACGAATCTTGCGCACACAGTTGCAATAGCCTGTGTCACTCTGGCGAATGTCTCCCTTGCGTAGAAGTGGTATTACTGAAATGCCGCTGTAAGAGTAACGAGAAGGTGGGCAAGTGCTACGAGGGCACGTGGATCTGCGAGAAACCCTGCAACAGGAGATTCTCCTGCAACGTGCACAGCTGCGAGAGCACTTGCCACCTACCCGGCGATTGCGGCAACTGTCCCCTGGAGAAGAACAGAACCTGTCCCTGCGGGAAAAAACGGTACGATGTTTCCTGCAGGCGACAGCAGGTGCCAACGTGCGGCGATACGTGCGGCAAATTACTCGACTGCGGCTCGCACTTCTGCAACATGCGATGCCACGCCGACCGGTGCGGCCAGTGCCTGGAGGTCGTGACGAAGGCGTGCAGATGTGGCAGCTACACGAAGGAGATCGCCTGCGCGAAGGAGTTCCACTGCAACAAGAAGTGCATGCAGATGCGCCTGTGCGGCAGACACATGTGCAACAGGAAATGCTGCGACTGCATTGCGAAGAACACGTCGAATCCTTGCGAGAAGACGTGCGAGAGCACGCTCAACTGCCGTAAGCACAAGTGCGCCGCACCCTGCCACAGCGGCCCCTGCTATCCGTGCACCCGAACGGATGTCATACAGTGCCGATGCGGCGGCAGCAAGATAACAGTGCCGTGCGGCACCAGGAAGAGGATCAAGCCGCCACCGTGCAACAAGTCCTGCAAGATTCCGCCCATCTGCCATCACAGCAAGAGGGAGACGCACAAGTGTCACCAGGGTCCGTGTCCACCCTGTAAGAAGATCTGCGGACTGACGCACAAGAGATGCGGTCACTCTTGCCCGGCCACTTGCCACACCAAGGTCTGGGTGAAGAGCCGGACGAACGGAATGAAGGCGCAGCCAGTTGGACCCTGGGAGAAACCAAAGGACGTTATGGAATTGAAGACCTTGCCGTGTCCACCGTGCGAGGTTTCCGTGCCCGTCACCTGCCTCGGTGGTCACGAGACGCGCCCTTGGCCGTGCCACATGTCGAAATCCAGCTCCTGCGGCAGACCTTGTGGCCAGCTACTACCGTGCAGGAATCACACTTGCGAGTTGATCTGCCACAAGCTACAGACCACCGACGACGAGTCCAACAGTGGTACCGCGTGGACGTCGCCCTGCATGGAGTGCGAAAAGGAATGCGGCTTCGCACGACCGTCAGGCTGCCCGCACACGTGCCCGCAGCCTTGTCACCCAGCGCCGTGTAAACCGTGCAAGCAACTGGTGCGAATCTCTTGTCACTGCGGTATTAGCACCCTGTACCGGCATTGCGTAAACCTGACATCTGCAACGAGCAAGGAACGGGACGAGTTACTCAAATGTGGAAACCAATGCCCAAAAAATtatCCGTGCGGCCACCGTTGCGTCAATGATTGCCATCCAGGAGAATGCAAAGGTGGAGAGGGATGCAGCAAGAAAGTTAGATTATGGTGTAAGTGTAAACGGATCAAGAAGGATTTTCTCTGTTTATTTCTGCAAAAGGAGCAGATTACTGTAGACTGCGATAGCGTGTGCGAGTCATTgaagaatgagagaaaagaagCCCAGAAAGCTATGATAGCGAAGAAGCTGGAAGAGGAGGAACTACGCAATCGGGAAGAAATCGAGAAGTTTGAGAAGAAATTCAAACCACGACGAAAAAGGAAGGACAAATATGATACCTCGAAACAATCCCAAGAAAACACAAAGAATAAGTATTGCAACGCATGGATTTTAGCAATTATCGTGAGCATTATAGGGATAATAGCGTACATGATCGTTTCTGACTTGAGTATATCTGGATTGAGCTGA
Protein Sequence
MQKFKRAQAQNKLSIERHLEANASLNSSSEEEDETNEEDVQNVVGKILSAYQGQNTDTEKVISYLVNSFQTSSAVCLICISTIKKMDPIWNCDKCYAFLHMSCILHWINDSLSYKRAKGITPIWACPKCRMEYDQDQIPRSYKCFCKKTVDPLPQPWVIPHSCGESCGKLLQPECGHKCVLLCHPGPCPPCAKMVSVKCYCGKLPAQPRRCNAKNWSCGTVCNKKYESCAHSCNSLCHSGECLPCVEVVLLKCRCKSNEKVGKCYEGTWICEKPCNRRFSCNVHSCESTCHLPGDCGNCPLEKNRTCPCGKKRYDVSCRRQQVPTCGDTCGKLLDCGSHFCNMRCHADRCGQCLEVVTKACRCGSYTKEIACAKEFHCNKKCMQMRLCGRHMCNRKCCDCIAKNTSNPCEKTCESTLNCRKHKCAAPCHSGPCYPCTRTDVIQCRCGGSKITVPCGTRKRIKPPPCNKSCKIPPICHHSKRETHKCHQGPCPPCKKICGLTHKRCGHSCPATCHTKVWVKSRTNGMKAQPVGPWEKPKDVMELKTLPCPPCEVSVPVTCLGGHETRPWPCHMSKSSSCGRPCGQLLPCRNHTCELICHKLQTTDDESNSGTAWTSPCMECEKECGFARPSGCPHTCPQPCHPAPCKPCKQLVRISCHCGISTLYRHCVNLTSATSKERDELLKCGNQCPKNYPCGHRCVNDCHPGECKGGEGCSKKVRLWCKCKRIKKDFLCLFLQKEQITVDCDSVCESLKNERKEAQKAMIAKKLEEEELRNREEIEKFEKKFKPRRKRKDKYDTSKQSQENTKNKYCNAWILAIIVSIIGIIAYMIVSDLSISGLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01476621;
90% Identity
iTF_01423331;
80% Identity
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