Tbic004039.1
Basic Information
- Insect
- Tetramorium bicarinatum
- Gene Symbol
- -
- Assembly
- GCA_011636605.1
- Location
- VBVP01000078.1:53459-57278[-]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1e-13 3.4e-10 40.5 5.0 5 65 39 98 36 103 0.91 2 4 4.4 1.5e+04 -3.2 0.3 44 52 112 120 109 123 0.65 3 4 1.8 5.9e+03 -1.9 0.0 47 59 204 216 174 218 0.55 4 4 5.8 1.9e+04 -3.6 1.2 5 11 249 255 246 256 0.63
Sequence Information
- Coding Sequence
- ATGTTGCTCCCGTGGATTCCGACACTGAAAGCATCCGATGGTAAAACTCGCGCACCGAAACGACCGAACAATGTCTTCTCCACGGAAGTTGAAATATGGAAATACCACGGTGAATCAATTCGTTGTCCTGCGTGTGGCGTCAAGGAGGTGCCGATAATATTAAAGCATCAGAAATTCATGAGCTCCCGGTTGGCAGCATTTTGCTTAATGGgATGCTGGCCCTTCTGCTTCATACCGTTGTTGATGAGACGAGACAAAAGCGTGCGCACGTTGTGCCCGCGTTGCGGCTACGATTACGGGATTTGTACGCGAGAAAAGAGTAAGCTGATCGCCTGTTCTCCCGAATGCGTGTCTAGCTGCGGGAAATTAAGCGATTTCACAAATTCACAATTGAGTCATCTTCGAGCAAAGTGTGGCGCTTTGCGAATGCAACCGGAGTATGGCCAAAAAACACTTTCCATGGGTGACGAGACTGCGAGAGCTCTCAGGGTCTCGGAGGAGCGTCCTCGGCGAGAAGAAGGCAGATCTCGCCGGTCGCAATCGAAGCTATCGCACGGATATGCCTTTTGTGCGAACCAGGTCACGAATTGCGGTTCACCATATGACGAGTACAGCAGCGACGATTGCGTGGACAAAAGATGGGATTGTCGTCGCGACTTGGACGAATCGAAAGCTTCGAAAGCTTGGGAACAAAGCGATTCCGAAGGCAGCGCGGGGACGGCGACGGTCGATTTTTATGCGAGACAGGTTTGCTGTCGGGAGTGTGGCTAG
- Protein Sequence
- MLLPWIPTLKASDGKTRAPKRPNNVFSTEVEIWKYHGESIRCPACGVKEVPIILKHQKFMSSRLAAFCLMGCWPFCFIPLLMRRDKSVRTLCPRCGYDYGICTREKSKLIACSPECVSSCGKLSDFTNSQLSHLRAKCGALRMQPEYGQKTLSMGDETARALRVSEERPRREEGRSRRSQSKLSHGYAFCANQVTNCGSPYDEYSSDDCVDKRWDCRRDLDESKASKAWEQSDSEGSAGTATVDFYARQVCCRECG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01408735;
- 90% Identity
- iTF_01423327;
- 80% Identity
- -