Basic Information

Insect: Tetramorium bicarinatum
Gene Symbol: -
Assembly: GCA_011636605.1
Location: VBVP01000438.1:61029-64508[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0033 0.45 11.6 0.4 1 23 126 149 126 149 0.90

2 12 0.0061 0.83 10.8 4.7 2 23 271 293 271 293 0.91

3 12 4.9 6.6e+02 1.7 7.6 3 23 442 463 441 463 0.95

4 12 0.64 88 4.4 1.1 1 23 513 536 513 536 0.94

5 12 0.00015 0.021 15.8 0.2 2 23 586 608 585 608 0.96

6 12 0.00095 0.13 13.3 0.1 3 23 630 651 628 651 0.93

7 12 0.0063 0.86 10.7 3.6 2 23 706 728 705 728 0.96

8 12 0.086 12 7.2 4.2 3 23 743 764 741 764 0.92

9 12 0.00022 0.03 15.3 0.1 2 23 812 834 812 834 0.94

10 12 0.12 17 6.7 0.5 1 23 913 935 913 935 0.98

11 12 0.014 1.9 9.6 2.4 2 23 949 971 948 971 0.93

12 12 0.0056 0.76 10.9 0.8 1 23 1043 1066 1043 1066 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0033	0.45	11.6	0.4	1	23	126	149	126	149	0.90
2	12	0.0061	0.83	10.8	4.7	2	23	271	293	271	293	0.91
3	12	4.9	6.6e+02	1.7	7.6	3	23	442	463	441	463	0.95
4	12	0.64	88	4.4	1.1	1	23	513	536	513	536	0.94
5	12	0.00015	0.021	15.8	0.2	2	23	586	608	585	608	0.96
6	12	0.00095	0.13	13.3	0.1	3	23	630	651	628	651	0.93
7	12	0.0063	0.86	10.7	3.6	2	23	706	728	705	728	0.96
8	12	0.086	12	7.2	4.2	3	23	743	764	741	764	0.92
9	12	0.00022	0.03	15.3	0.1	2	23	812	834	812	834	0.94
10	12	0.12	17	6.7	0.5	1	23	913	935	913	935	0.98
11	12	0.014	1.9	9.6	2.4	2	23	949	971	948	971	0.93
12	12	0.0056	0.76	10.9	0.8	1	23	1043	1066	1043	1066	0.98

Sequence Information

Coding Sequence: ATGTCGTCGAGCGTGACATCGTCTCACGAGCCCACGACGGCGCCGGCGACGGAGGCGACGGAGCTGGACAGCGACGGTTCGAGCTGCGGCGAGCGTGACTCTTGGAAGCGCGTTCGCGGCGACCCCGCCGACGTCGGGCCGAAGAAGCGTCGGAAGCAGACCACGCCGGTAAGAGTCTCGTCTGGCCTCACGGACCTGCACGAGGATGCGCACGAGGACGAACGCAGGGACGAGGACGTCGAAGGTAAGCCGTCGTCGCGATCGCCGTTGCTGAGCAACgaccatcaccaccaccaaCAACAACACCACCAcgaccaccaccaccaccaccatcaccactCGCCGTCGTCGAAAGACGAGAATCTGAACAACGAGTTTCGCTGCCAGCACTGCGGCCGGCTCTTCGACAGCGACGAGACGCTCAACGTCCACGTGGACGGCGAGCACGGTGGCGTGAGTCAGGCGACGCCGGCTGTCGCCATCAAGGTAGAGCCGGCGCAGCAGCTGGACACGACTAACGAGGGTCCCGTTAGTCTCTTAAGCGTTAAGAACTTCGCGACCACGTGGCTGGCGCCCGGCAGTCAGCAGCACGTGCAGTCGCAGACGCAGATGCAGCCGCAGAGCGACGAGTCGTGGTCGGGCGGCCCGGTCAATCAGATCGTCACGATGACCAATCACCTACAGGCGCTCACGAATTTCCCGGGCGGCCTCGCGCAGTATATACCCCTGCCAAACTTTCCCCTGACCGATCCTCAGCTCACCCGATCCTCCCTCGGTCCGGTGCCGATCAAGATTTTCAATCCGGACGCGTACTGCGACATGTGCAACAAGGAGTTTTGCAACAAGTACTTCCTGAAGACGCACAAGGCCAACAAGCACGGGATCTACGTTGATTCGCCGGCGCCAACCGTCGTAGATTCCGCCAATGCTGTCGGCGGCGGCGTGTTCGGCACCGCGAACTTTCACGCGGGTAACGCGAGCGTGAAGCTGGAGCCGCCGGCGACTCCGCCGCAGAAACGTTTCCGCAACGACGATCCCGCGAGAAAGCACAAACAGAAAACGCACAACGAGTCGCCGACGGATCAACAGACGGACGGCCAGCAGATCACCATGTCGCAGAGCGAGGAGGACCGAGTGACGCCGCGCGACAGTCCCGGTGGCATGGAGGTGCTTATGAAACAGGAGTACGGCGTCGAGCAGGAAGACGCGACCTTCATGCCGGCCCCGAGACACCTCTCGCCTCAATCCATCCAGCAGGCGCGCGATTCCGGCTTCAGCGCCGATCTTCTGCGCCATCTGGGCGTCATAAATCCCGAGGCGTTCTGCGAGATCTGCTGCAAGGAGTACTGCAACAAATATTTCCTGCGCACGCACAAGATGAAGCGGCACGGCATCGTCGTGCAGGACAACGAGAAGTCGCCCGGCACACCCGGTACGGCCGTCGCCACTTGGCACCAGGTGCAGACCAGTCCGCTGAACCTGATCGTGTCCGAGGCCGCAACAGGTGCGGAGTCCAGCGATCGCGGCGGCGAGGAGTACGAGTGCAAGCCCTGCGACATTCGCTTCCAGACGATCGATCTGTATCAGGCGCACTGCAGGATGCTGCACGAGAGCGAGGAAGCAGGACGAGGCTCGCCGAAGCAGGAGTACGAGTTGGATAACTCCGATCAGCGTACCGACTCGATCTCGGAGGACCTTCAGAAGCTGCAGACGATGATCATGCAGCTGAACAATTTGGATTCCGGCAAGGGACTGTCCTGCGCCGTCTGCGGCAGGGAATGTGATTCGAGATCGGCCCTGCGCGTTCACATGGCGACCGAACACGGTGTCGCCGGTGATGAGGCCTCGTCGCCGCAGAAGTCTCCTACGGCCATTTTGACTATTTTCTGCACTCTTTGTGAGAAGGATTATCCCAGCCAAGAAGCCCTGAGGAGACACATTAGCGAGGAACATCAGCCTATTGTGTCCAGTGCGATTACTCTGCCGACGCTGCCGCCAACTGTGATCGCCTCTTCCGCCAGTTCAACACCGACCAGTCAGACACCAAGCGGCCAAACGACGACGACTTCGACAACGACGGAAAAAAAGGTGACGTCACTGACCCCGACGTCGAGTTACTGTGAAATCTGCAACAAGGAGCTGTGCAACAAGTATTTCATGAAGACGCACATGCAGCGGATGCACGGCATCGAGATCGAGAACGGCGCGCAGATCGGTGGTGTCATCTGCAACATCTGCAACAAGGAGCTATGCAGCAAGTACTTCCTGCGAGTTCACAAGCACAATACTCACGGGATTGTCGACGAGAACACGTCGTCGGGATCGGCGTCGAACAAGCAGGAACCCTACGACGCTCCCGGCGCCGAGGACTCGGCGTTGAAACCGGACCAACTGGGCGATCTCAGTCACAAATACTTCACCCATTTCACCGAGGTATGTCCGATCTGCAGCCGAAGGTTCCGCAGCATCAAGTGGCTGAAGGCTCATCTGATGGGCGACCACAGCAAGGCGGGGATCGACAAGTGGCGCGAGTTGGAGCAGCAATATCAAGCGACGTCCAGAACCAGCGGTAGAGGCGTCGCCTCAACGAAGAACGCGCAACAAACGTCGAATCTGAAGATCCCCAACGGCTTCGAAGTCGCCCAACAGACCAAGCCTGTCGATTACACGAGTCTGGGAAATCAGATGCTGTCGAATCTTCTCGGTTCCCCGTCCGAGGAACAACAGTTGAAGAACTACCGCTGCGGCTACTGCAACTTTACGACCCCCGTGCtaccctttctctttcttcacgAGCGATCCCACATGAGCTCTCAGGAAAACCTCGAGGGGGATCGGGCGCTGCAGTGCCCTATCTGCTCGCACGACTTCCATCAGCCGGAGTTGCTTCATCAGCATCTGCTCGCCAAGCATCAGTTCCCCTCTCTGTTGTCGCAATTCCAGCATCCTCTCGTGAATAACTTTAGATCGGACATTGACGTCAAAACAGGCGACATCAAGGAAAGAGCCGAGGACTCGAAGAACGACCGTGTGGGATGCAGTCCGCAAACCGAACGCAATGTCCCCGAGCCCGCGAGAAATCAACGGCAGGACGATACTGCGGTGCAGGTGACACCTCAGGGCGTGTACAAGTGCGCCCAGTGCGGCTACGCGACAACGAATCTGAATCGCATTAAGAAGCACGTGCGCAAGGATCACAAGGCGATAGGCGACCCGACGGAGAGCGTGATCGCCGAGCTCAGCAGGACTCTGAAGGACGTGGCGAACAAGCAGAAAATGCCGGTCTGTTACGCTATGCCGCAGGACCCGAATCCCGACAAGACTATCATGCAGCCGTTCCTGATCGAGGAGCAAGATCTGATGCAGGTGGGCGCCGAGTCCAGCTCGGCGAAGAGATTCGCGCCGGCCCTGGTCTACTTGCCGGTCAAGTCCAGAATCAGCAGCGCCCTGACCGCCTCCTTCACCCTCAGCCCCGCCTGA
Protein Sequence: MSSSVTSSHEPTTAPATEATELDSDGSSCGERDSWKRVRGDPADVGPKKRRKQTTPVRVSSGLTDLHEDAHEDERRDEDVEGKPSSRSPLLSNDHHHHQQQHHHDHHHHHHHHSPSSKDENLNNEFRCQHCGRLFDSDETLNVHVDGEHGGVSQATPAVAIKVEPAQQLDTTNEGPVSLLSVKNFATTWLAPGSQQHVQSQTQMQPQSDESWSGGPVNQIVTMTNHLQALTNFPGGLAQYIPLPNFPLTDPQLTRSSLGPVPIKIFNPDAYCDMCNKEFCNKYFLKTHKANKHGIYVDSPAPTVVDSANAVGGGVFGTANFHAGNASVKLEPPATPPQKRFRNDDPARKHKQKTHNESPTDQQTDGQQITMSQSEEDRVTPRDSPGGMEVLMKQEYGVEQEDATFMPAPRHLSPQSIQQARDSGFSADLLRHLGVINPEAFCEICCKEYCNKYFLRTHKMKRHGIVVQDNEKSPGTPGTAVATWHQVQTSPLNLIVSEAATGAESSDRGGEEYECKPCDIRFQTIDLYQAHCRMLHESEEAGRGSPKQEYELDNSDQRTDSISEDLQKLQTMIMQLNNLDSGKGLSCAVCGRECDSRSALRVHMATEHGVAGDEASSPQKSPTAILTIFCTLCEKDYPSQEALRRHISEEHQPIVSSAITLPTLPPTVIASSASSTPTSQTPSGQTTTTSTTTEKKVTSLTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVDENTSSGSASNKQEPYDAPGAEDSALKPDQLGDLSHKYFTHFTEVCPICSRRFRSIKWLKAHLMGDHSKAGIDKWRELEQQYQATSRTSGRGVASTKNAQQTSNLKIPNGFEVAQQTKPVDYTSLGNQMLSNLLGSPSEEQQLKNYRCGYCNFTTPVLPFLFLHERSHMSSQENLEGDRALQCPICSHDFHQPELLHQHLLAKHQFPSLLSQFQHPLVNNFRSDIDVKTGDIKERAEDSKNDRVGCSPQTERNVPEPARNQRQDDTAVQVTPQGVYKCAQCGYATTNLNRIKKHVRKDHKAIGDPTESVIAELSRTLKDVANKQKMPVCYAMPQDPNPDKTIMQPFLIEEQDLMQVGAESSSAKRFAPALVYLPVKSRISSALTASFTLSPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01423182;
90% Identity: iTF_00885546;
80% Identity: -