Basic Information

Insect: Leptothorax acervorum
Gene Symbol: -
Assembly: GCA_035220615.1
Location: JASTWQ010000109.1:82820-86311[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0047 0.84 11.6 0.4 1 23 122 145 122 145 0.90

2 12 0.0086 1.5 10.8 4.7 2 23 267 289 267 289 0.91

3 12 8.1 1.4e+03 1.4 1.1 8 23 337 353 336 353 0.93

4 12 6.9 1.2e+03 1.7 7.6 3 23 440 461 439 461 0.95

5 12 0.00024 0.043 15.7 0.4 2 23 583 605 582 605 0.96

6 12 0.00054 0.096 14.6 0.1 2 23 627 649 626 649 0.93

7 12 0.009 1.6 10.7 3.6 2 23 707 729 706 729 0.96

8 12 0.12 22 7.2 4.2 3 23 744 765 742 765 0.92

9 12 0.00031 0.055 15.3 0.1 2 23 815 837 815 837 0.94

10 12 0.17 31 6.7 0.5 1 23 916 938 916 938 0.98

11 12 0.02 3.5 9.6 2.4 2 23 952 974 951 974 0.93

12 12 0.008 1.4 10.9 0.8 1 23 1047 1070 1047 1070 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0047	0.84	11.6	0.4	1	23	122	145	122	145	0.90
2	12	0.0086	1.5	10.8	4.7	2	23	267	289	267	289	0.91
3	12	8.1	1.4e+03	1.4	1.1	8	23	337	353	336	353	0.93
4	12	6.9	1.2e+03	1.7	7.6	3	23	440	461	439	461	0.95
5	12	0.00024	0.043	15.7	0.4	2	23	583	605	582	605	0.96
6	12	0.00054	0.096	14.6	0.1	2	23	627	649	626	649	0.93
7	12	0.009	1.6	10.7	3.6	2	23	707	729	706	729	0.96
8	12	0.12	22	7.2	4.2	3	23	744	765	742	765	0.92
9	12	0.00031	0.055	15.3	0.1	2	23	815	837	815	837	0.94
10	12	0.17	31	6.7	0.5	1	23	916	938	916	938	0.98
11	12	0.02	3.5	9.6	2.4	2	23	952	974	951	974	0.93
12	12	0.008	1.4	10.9	0.8	1	23	1047	1070	1047	1070	0.98

Sequence Information

Coding Sequence: ATGTCGTCGAGCGTGACATCGTCTCACGAGGccacgacggcgacggcggagGCGACGGAGCTGGACAGCGACGGTTCGAGCTGCGGCGAACGCGACGTCTGGAAGCGCGTTCGCGGCGATCCCGCCGACGCCGCGGGGCCCAAGAAGCGTCGGAAGCAGACCACGCCGGTAAGAGTCTCGTCTGCCTTCGCGGGCGCGCACGAGGATGCGCGTGAGGACGAACGCAAGGACGAGGACGTCGAAGGTAAGCCGTCGTCGCGATCGCCGTTGCTGAGCAACGATCATCACCACCAAcaacaccaccaccaccaccatcaccatcaccacTCGCCGTCGTCGAAAGACGAGAATCTGAACAACGAGTTCCGTTGCCAGCACTGCGGCCGGCTCTTCGACAGCGACGAGACGCTCAATGTCCACGTGGACGGCGAGCACGGTGGCGCGAGTCAGGTGACGCCGGCTGTCGCCATCAAGATAGAGCCGGCGCAGCAGCTGGACCCGACTAACGAGGGTCCCGTTAGTCTCTTAAGCGTTAAGAACTTCGCGACCACGTGGCTGGCGTCCGGCAGCCAGCAGCACGTGCAATCGCAGACGCAGATGCAGTCGCAGAGCGACGAATCGTGGTCGGGCGGCCCGGTAAATCAGATCGTCACGATGACCAATCACCTACAGGCGCTCTCGACTTTCCCGGGCGCCCTCGCGCCGTACCTACCCCTGCCAAGTTTTCCCCTGACCGATCCTCAGCTCCCCAGATCCTCCCTCGGTCCTGTGCCGGTCAAGATTTTTAATCCGGACGCGTATTGCGACATGTGTAACAAGGAGTTTTGCAACAAGTACTTCCTGAAGACGCACAAGGCCAACAAGCACGGGATCTACGTTGACTTGCCGGCGCCAATCGTGGCTGTAGATTCGGCTAATgtcgtcgtcggcggcggcgtGTTCGGCGCCGCGAACTTCCCCGCGGGTAACGCGAGCGTGAAACTGGAGCCGCCGGCGACTCCGCCGCAGAAGCGTTTCCGCAACGAGGATTCCGCGAGAAAGCACAAGCAGAAAACGCACAATGAGTCGCCGACAGATCAGCAGACAGACGGCCAGCAGATCTCTGTGTCGCAGAGCGAGGAAGGCCAAGTGACGCCGCGCGACAGTCCCGGCGGCATGGAAGCGCTTCTGAAGCAGGACTACGGCGTTGAACAGGAAGATGCAACCTTCATGCCGGCCCCGAGACACCTCTCGCCCCAGTCCATCCAGCAAGCACGCGATTCTGGTTTCAGCGCCGATCTTCTGCGTCATCTGGGCGTCATAAATCCCGAAGCGTTCTGCGAGATCTGCTGCAAGGAGTACTGCAACAAGTACTTCCTGCGCACGCATAAAATGAAACGACACGGCATGGTCGTGCAGGACAATGAGAAATCGCCCGGCAACCCCGGCACGACCGTCGCCACTTGGCACCAGGTGCAGACCAGTCCGCTGAACTTAATCGTGTCCGAGACCGCCGCGACTGGTGCGGAGTCCAACGACCGCAGCGGCGAGGAGCACGAGTGCAAACCATGCGACATCCGCTTCCAGACGATCGGTCTGTATCAGGCGCACTGCAGGAAGATGCACGAGAACGAGGAGCGCGGCTCGCCGAAGCAGGAATACGATCTGGACAGCACTGATCAGCGCACCGACTCGATCTCGGAGGATCTTCAGAAGCTGCAGACTATGATCATGCAGCTGAACGGTCTGGATTCCGGTAAGGGATTATCCTGCGCTGTCTGCGGCAGGGAATGTGATTCAAGGTCGGCCCTGCGCGTTCATATGACGACCGAACATGGTGTCGCCGGGGATGAAGCCTCGTCGTCGCCGCAGAAGTCACCCACGGTCATCTCAACTATTTACTGCACTCTCTGCGAGAAGGATTATCCTAGCCAAGACGCACTGAGGAGACACATTAGCGAGGAACATCAACCCATCGTGTCCAGCGCTATTACTCTACCGACACTGCCGCCAACGGTAATCGCCTCTTCCGCCAGTTCGACGCCGACCAGTCAGACTCCGAGCGGccaaacgacgacgacgacgacgacgacaatgacGACGGAAAGGAAGGTGACGTCACTGACCCCTACGTCGAGTTACTGTGAGATCTGCAACAAGGAGCTGTGTAACAAATATTTCATGAAGACTCACATGCAACGCATGCACGGCATCGAGATCGAGAACGGCGCGCAGATCGGCGGCGTCATCTGCAACATCTGCAACAAGGAGCTATGCAGCAAGTACTTCTTACGGGTTCACAAGCACAACACTCACGGGATCGTCGACGAGAACACGTCGTCGTCGGGTACGGCGTCAAACAAGCAGGAGGCGTCCTATGACGCTCCCAGCGCCGAAGACTCGGCATTGAAACCGGAGCAATTGGGCGATCTCAGTCACAGATACTTCACCCACTTCACCGAGGTATGTCCGATCTGCAGTCGAAGGTTTCGCAGCATCAAGTGGCTGAAGGCTCACCTGATGGGCGATCACGGCAAAGCGGGGGTCGACAAATGGCACGAATTGGAGCAGCAGTATCAAGCGACGTCCAGAACCAGCGGTAGAAGCGTCGCTTCAGCGAAGAACTCGCAGCAAACGTCGAATCTGAAGATTCCCAATGGCTTCGAGGTCGCCCAACAGGCCAAGCCTGTCGATTACACGAGTCTGGGAAATCAGATGCTGTCGAATCTCCTCGGCTCCTCGTCCGAGGAGCCCCAATTGAAGAACTATCGCTGCGGCTACTGCAACTTTACGACCCCCGTGCTACCCTTCCTCTTTCTTCACGAGCGATCCCACGTGAGCTCTCAGGAAAACCTCGAGGGGGATCGAGCGCTGCAATGCCCGATCTGCTCCCATGACTTCCATCAGCCTGAGCTGCTTCATCAGCATCTGCTCGCCAAGCATCAGTTCCCCTCTCTGTTGTCGCAATTCCAGCATCCTTTCGTGAATAACTTCAGATCGGACATCGACGTCAAAACAAGCGACGTCAAGGACAGAGCTGATCAGGATTCGAAAAACGACCGCGTTGGATGCAGTCCGCAAACCGATCGGAACGTTCCCGAGCCCGCGAGAAACCAGCGGCAGGATGAAACCGCGGTGCAGGTGACACCTCAGGGTGTGTACAAGTGCGCCCAGTGCGGCTACGCGACAACGAATCTGAATCGCATTAAGAAGCACGTGCGGAAGGATCACAAGGCGATAGGCGATCCGACGGAGAGCGTGATCGCCGAGCTCAGCAAGACCCTGAAGGACGTGGCGAACAAGCAGAAGATGCCGGCCTGTTACGCGATGCCGCAGGACTCGAACCCCGAGAAGACCATCATGCAGCCGTTCCTGATCGAGGAGCAGGATCTTATGCAGGTGGGCGCCGAGTCCAGCTCGGCGAAGAGATTCGCGCCGGCCCTAGTCTACTTGCCGGTCAAGTCCAGAATCAGCAACGCTCTGACCGCCTCCTTCACTCTCACCCCCGCCTGA
Protein Sequence: MSSSVTSSHEATTATAEATELDSDGSSCGERDVWKRVRGDPADAAGPKKRRKQTTPVRVSSAFAGAHEDAREDERKDEDVEGKPSSRSPLLSNDHHHQQHHHHHHHHHHSPSSKDENLNNEFRCQHCGRLFDSDETLNVHVDGEHGGASQVTPAVAIKIEPAQQLDPTNEGPVSLLSVKNFATTWLASGSQQHVQSQTQMQSQSDESWSGGPVNQIVTMTNHLQALSTFPGALAPYLPLPSFPLTDPQLPRSSLGPVPVKIFNPDAYCDMCNKEFCNKYFLKTHKANKHGIYVDLPAPIVAVDSANVVVGGGVFGAANFPAGNASVKLEPPATPPQKRFRNEDSARKHKQKTHNESPTDQQTDGQQISVSQSEEGQVTPRDSPGGMEALLKQDYGVEQEDATFMPAPRHLSPQSIQQARDSGFSADLLRHLGVINPEAFCEICCKEYCNKYFLRTHKMKRHGMVVQDNEKSPGNPGTTVATWHQVQTSPLNLIVSETAATGAESNDRSGEEHECKPCDIRFQTIGLYQAHCRKMHENEERGSPKQEYDLDSTDQRTDSISEDLQKLQTMIMQLNGLDSGKGLSCAVCGRECDSRSALRVHMTTEHGVAGDEASSSPQKSPTVISTIYCTLCEKDYPSQDALRRHISEEHQPIVSSAITLPTLPPTVIASSASSTPTSQTPSGQTTTTTTTTMTTERKVTSLTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIVDENTSSSGTASNKQEASYDAPSAEDSALKPEQLGDLSHRYFTHFTEVCPICSRRFRSIKWLKAHLMGDHGKAGVDKWHELEQQYQATSRTSGRSVASAKNSQQTSNLKIPNGFEVAQQAKPVDYTSLGNQMLSNLLGSSSEEPQLKNYRCGYCNFTTPVLPFLFLHERSHVSSQENLEGDRALQCPICSHDFHQPELLHQHLLAKHQFPSLLSQFQHPFVNNFRSDIDVKTSDVKDRADQDSKNDRVGCSPQTDRNVPEPARNQRQDETAVQVTPQGVYKCAQCGYATTNLNRIKKHVRKDHKAIGDPTESVIAELSKTLKDVANKQKMPACYAMPQDSNPEKTIMQPFLIEEQDLMQVGAESSSAKRFAPALVYLPVKSRISNALTASFTLTPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01423182;
90% Identity: iTF_01406129; iTF_01421798; iTF_01423182; iTF_01423918; iTF_01422475; iTF_01409594;
80% Identity: -