Tbic012233.1
Basic Information
- Insect
- Tetramorium bicarinatum
- Gene Symbol
- Gzf1
- Assembly
- GCA_011636605.1
- Location
- VBVP01006146.1:4591-8319[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0044 0.59 11.2 3.8 1 23 20 43 20 43 0.96 2 19 9.9e-06 0.0014 19.6 0.5 1 23 49 71 49 71 0.97 3 19 0.0034 0.46 11.6 4.4 1 23 77 99 77 99 0.98 4 19 0.00052 0.071 14.1 2.8 1 23 105 127 105 127 0.98 5 19 7.9e-05 0.011 16.7 2.6 1 23 172 195 172 195 0.95 6 19 0.34 47 5.3 0.8 3 23 206 226 204 226 0.95 7 19 1.2e-07 1.7e-05 25.5 1.8 1 23 232 254 232 254 0.98 8 19 2.9e-06 0.00039 21.2 1.1 1 23 260 282 260 282 0.97 9 19 1e-07 1.4e-05 25.8 0.9 1 23 288 310 288 310 0.99 10 19 0.39 53 5.1 0.4 3 23 343 364 342 364 0.96 11 19 0.0019 0.26 12.4 1.0 1 23 370 393 370 393 0.96 12 19 0.58 78 4.6 0.2 2 23 399 421 398 421 0.95 13 19 2.5e-05 0.0035 18.3 0.3 1 23 427 449 427 449 0.98 14 19 0.062 8.4 7.6 1.4 2 23 456 478 455 478 0.94 15 19 1.2e-05 0.0017 19.3 2.0 1 23 498 521 498 521 0.93 16 19 0.0019 0.26 12.4 0.1 1 23 532 554 532 554 0.95 17 19 0.0073 0.99 10.5 3.6 1 23 560 582 560 582 0.94 18 19 4.5e-07 6.1e-05 23.8 1.1 1 23 588 610 588 610 0.98 19 19 5e-06 0.00069 20.5 1.5 1 23 616 639 616 639 0.98
Sequence Information
- Coding Sequence
- ATGGTAGGTAGCGCTCACAAACTGAAgaaGCAACGACGGGGTAGATCGCGCGCTGTGCACCAATGCGTCAAGTGCGGGGCACGCTTCCGTCATACACGGAAGCTCGTAGAGCACTTGAAGAATTTGCACAATATCGACCGGGCATTCAGCTGCGACGAGTGCAACAAGACATTTCGCAGCCCTATGAACATAGCTCGTCACAAACTGATCCACACGGGATTGAGAATGTTCACCTGCGATCTCTGCGAATACAGTACCAATCAGAAGTCCAATCTGGAATGCCATCGTCGGCGGCACGCCAAGGACTATAGCTTCAAGTGCGAGACGTGTGATAAGGGCTTCTTCCACAGGACCGAGTACCTGGAACACCAAAACGCCCACACGAACAAGAGTCTATATCGTTGCGAGCACTGTTGCAAGCATTACCTGTACAAGAAGAACCTATCGGTGCACCTGGTGATGCATCACGCCGGCAAACAGACCGCCGCAGCCGCGAGGAACGCGAGGACGAGGCACGCGTGCAAGTTCTGCCCGGAGAGATTCGTGTACAAGAGGCTGCTGGAAAGGCACATGAAGAACCAGCACGGATTCGCGAACGCGCCGGCGAAGCACCTATGTGACCTGTGCGGCGCCGAACTGTCGTCGATGAGACGACTAATGGTGCACAAACGCAATCATGCGGGCGAGAAGATTTTCGAGTGCGACACGTGCGACAAGAGGTTCACCAGCAAGGAGAACCTGATGATCCACAAGCGGACGCACACGGGCGACAAACCGCACGTGTGCCCGCAATGCGGCCGCGGCTTCACGCAGAGAACATCCCTGGTCCTGCATCTGCGATATCATTCGGGTCAGAGACCTTACCAGTGCCAGGATTGCGGCAAGGGATTCGTGTCCAACACCTTGCTCAAGAGGCATCGCAAGGTGCATGAGAAGGCCGCCCAGTGGACGAATAATCACGATTTGAAGGTGAAGAACGAGGATTTGCCTGATCTTGGACAGAAATTCGAAGGTGGCGAGAAGATTTGCGAGCTATGCCAGGCGAAATTCCACTTTGTTACTAGACTGGTCGCGCATCTGAGGATAGCGCACGGCATCCTGCGGCCTTTTAAGTGCATCACTTGCGACAAGAATTATCCCCAGCAGTTCATGCTGAACGCCCACGTGAAGAAGTCGCACACGCCGAAAACCGTGCCATGTACCCAGTGCAACTTTATGGGTGTCAACGTGATCGACGTGGAGAAACACAGACGGCGACGTCACCGAGCTCTACCGAAATTCACATGCGAGATTTGCAGCCAGGATTTCGCCGATAAGGACACTCTGACCGCGCACACGACGATGCACGATTTCATGCAGTATCAGCGATGCAACGCATGCGGTAGCATCTTCAACGATATGCACAGCTTGAAGGAACACAATCGTCTTTACCACTACGATCCTGCAACGGATGGGAAGTTGTTCGAGGAGTCCAGCGAGAACGGATCCGAGCACAAATGCGACGTTTGCGGCAAGGTCTACAAATATAGTTCAATGCTGAAGCAGCACAAGGTCAGAGTTCACGGTGACCCGTCGAACCACGAGAGATGCAGGTATCTTTGCGCACTGTGCGGCAAGGAGTTGAAGACCGCGAAGGGCCTCGAAATCCACAACAGGTCGCACACCGGCGAAAAGCCATATACGTGCGAAGTGTGCGGCAAGTGTTTCGCCTGTGAGACCCTGTTGAGAACTCACAATGTCACCCACACCGGAGAACGGAAATATTCGTGCGACCAATGCGGCAAGGCTTTTACGCAAAGGTCCACTCTGGTTGTTCACAAGCGATATCACACGGGCGAACGACCGTACGTTTGTCCTCGCTGCGGTAAGGGTTTCGTCACGCGAACTGTCCTTAATACTCACATGAAGTCTTGTCATTGA
- Protein Sequence
- MVGSAHKLKKQRRGRSRAVHQCVKCGARFRHTRKLVEHLKNLHNIDRAFSCDECNKTFRSPMNIARHKLIHTGLRMFTCDLCEYSTNQKSNLECHRRRHAKDYSFKCETCDKGFFHRTEYLEHQNAHTNKSLYRCEHCCKHYLYKKNLSVHLVMHHAGKQTAAAARNARTRHACKFCPERFVYKRLLERHMKNQHGFANAPAKHLCDLCGAELSSMRRLMVHKRNHAGEKIFECDTCDKRFTSKENLMIHKRTHTGDKPHVCPQCGRGFTQRTSLVLHLRYHSGQRPYQCQDCGKGFVSNTLLKRHRKVHEKAAQWTNNHDLKVKNEDLPDLGQKFEGGEKICELCQAKFHFVTRLVAHLRIAHGILRPFKCITCDKNYPQQFMLNAHVKKSHTPKTVPCTQCNFMGVNVIDVEKHRRRRHRALPKFTCEICSQDFADKDTLTAHTTMHDFMQYQRCNACGSIFNDMHSLKEHNRLYHYDPATDGKLFEESSENGSEHKCDVCGKVYKYSSMLKQHKVRVHGDPSNHERCRYLCALCGKELKTAKGLEIHNRSHTGEKPYTCEVCGKCFACETLLRTHNVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHTGERPYVCPRCGKGFVTRTVLNTHMKSCH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00869051;
- 90% Identity
- iTF_01409381;
- 80% Identity
- -