Basic Information

Insect: Tetragonula hockingsi
Gene Symbol: -
Assembly: GCA_010645185.1
Location: WIUV01001017.1:5099-6757[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3.8e-05 0.0072 17.8 1.0 3 23 232 253 230 253 0.95

2 10 0.0011 0.21 13.1 2.8 1 23 257 279 257 279 0.98

3 10 0.0045 0.85 11.2 2.3 1 23 285 308 285 308 0.97

4 10 6.7e-05 0.013 17.0 0.5 1 23 315 338 315 338 0.96

5 10 0.00013 0.025 16.1 0.6 1 23 372 395 372 395 0.97

6 10 0.24 46 5.8 0.3 5 21 404 420 403 421 0.90

7 10 0.00086 0.16 13.5 0.1 5 23 432 450 430 450 0.95

8 10 1.3e-05 0.0024 19.2 4.5 1 23 452 474 452 474 0.96

9 10 2e-05 0.0036 18.7 2.2 1 23 480 502 480 502 0.95

10 10 1.2e-06 0.00023 22.5 0.7 1 23 508 530 508 530 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3.8e-05	0.0072	17.8	1.0	3	23	232	253	230	253	0.95
2	10	0.0011	0.21	13.1	2.8	1	23	257	279	257	279	0.98
3	10	0.0045	0.85	11.2	2.3	1	23	285	308	285	308	0.97
4	10	6.7e-05	0.013	17.0	0.5	1	23	315	338	315	338	0.96
5	10	0.00013	0.025	16.1	0.6	1	23	372	395	372	395	0.97
6	10	0.24	46	5.8	0.3	5	21	404	420	403	421	0.90
7	10	0.00086	0.16	13.5	0.1	5	23	432	450	430	450	0.95
8	10	1.3e-05	0.0024	19.2	4.5	1	23	452	474	452	474	0.96
9	10	2e-05	0.0036	18.7	2.2	1	23	480	502	480	502	0.95
10	10	1.2e-06	0.00023	22.5	0.7	1	23	508	530	508	530	0.99

Sequence Information

Coding Sequence: ATGGAATGTTTCAGGAGGTCTACGATCGCAGAAACGTCCCTGGACCAGGGTAGAAATGATCGACCGCAGTTCCAAGTTACTGTTCCAGCTTCCAGTCCAACGATAGGCGTCTCCTCGATGCCCTGGAAAATTGAGATAAATCGGGACGAGGATGACGAGACGATGACGGCTAGAAACGACGAAGATAGTGTAAACGACAATGATTCCTCTTTAGGGAGAATAGTAGCAGAGGATTCAACCGTGGATTCAGTGAAGACTGTTTTGGTACCTGTTAGAGACCCAGTGACGAAGCAAGTTAGAAATGTGTTGGTGCCTGTTGAAGAGATGGACGATACTGGATTGAACGTCATCAAAAGTGTACTGATACCTTTGCAGGAACAGGATGGGTCGATTTCTTATGAAATTAAGAAAGTCGTAGTGCCTATCAACCCGGAATTCAGCTTGCCACCGAGAAAAAAGGCCGAAGCTAAGTCATTGACGAGTAAAGTCAAAGGTACGCAGGtgaattgtaagaaaaaagaggaaaaagcaACCGAAGAGAAAAGTAAGATATCGTTTGATACTTTTAGCGAAGAAGCTAAGggacaagaagaaaaagtgagGAAGCAgaaggaaacgaaggaaatagAGAAAGTACCAACGGATGCATCGAAGGGAGAAGTAGATCAGATACTGGACACCTTAAGAGACATTTGTCCATTCTGTCAGAAACGTTTCAAGGACGAAAACCAGATGCAGAAGCACATTCTAAAAACACACAGGAAGCCCTACAACTGCGACAAGTGTCACAAAGGATACTTCACCGACTTCGCGCTGGAGGAACATCAGAAAACGCACGAGGTGGTCTCGTTTTATCAGTGTTCCGTTTGCCAGATGCAGTACAAGACGACGACGGGATTGAAGTATCATCGGATTCGCAAACACAGCGACATTGACCCGATATTCACGTGCGATTACTGTGGCAAGCGATTCAAACTGAAGTTGGACTTGGGTGTTCACATCGACAGATCCCACATGAACGTCACTCACATTTGCAGATTTTGCGGCATGGCCGTGAAGAACATCGTGTATCACGAGTTGAAGCACGAGAAACATAAGAAGGCCAGCTCTCTTTATCGTTGCAGCGTCTGCCCTAGAAAATTCAAAGCGTGGAACAGATTGGAGAACCATTTGCTGATGAAACACAAATCGCCCGATATGTTAAGGACGCTCtgcgagaagaaatttcaatcgagacGTGACTTTTACCGGCACGTGCTCACTCAGTCGGTGGCGAAGCAAAACAAACGCGTCGTGTGCGACAAAACATTCGCCTTTGAGTACAATCTTCGCAATCACGTGGCTTCGCACTCGTACTTGTGCTGCCAGTGCGGCAAGAATTTCACCACGAATTATTTGTTGAAGCTGCACCTTCGGAAACACACTGGCGAACGTCCGTATCAGTGTAAAACGTGTCTGAAGACGTTCACCAGATCAGACTCGCTTAGGGTACACAGCTTCATTCACACCGGAGAGAGACCATACGTGTGCGACCTGTGTGGTCAAAGTTTCACTCAGAAAGGGAGCATGATGATACATCGTCGCAAGCATCCCGGAGATCACCCGCCGCCACCTCATCCTCCTCTAATACTCAGTAGACTCGAAAATAACGAGCATTAA
Protein Sequence: MECFRRSTIAETSLDQGRNDRPQFQVTVPASSPTIGVSSMPWKIEINRDEDDETMTARNDEDSVNDNDSSLGRIVAEDSTVDSVKTVLVPVRDPVTKQVRNVLVPVEEMDDTGLNVIKSVLIPLQEQDGSISYEIKKVVVPINPEFSLPPRKKAEAKSLTSKVKGTQVNCKKKEEKATEEKSKISFDTFSEEAKGQEEKVRKQKETKEIEKVPTDASKGEVDQILDTLRDICPFCQKRFKDENQMQKHILKTHRKPYNCDKCHKGYFTDFALEEHQKTHEVVSFYQCSVCQMQYKTTTGLKYHRIRKHSDIDPIFTCDYCGKRFKLKLDLGVHIDRSHMNVTHICRFCGMAVKNIVYHELKHEKHKKASSLYRCSVCPRKFKAWNRLENHLLMKHKSPDMLRTLCEKKFQSRRDFYRHVLTQSVAKQNKRVVCDKTFAFEYNLRNHVASHSYLCCQCGKNFTTNYLLKLHLRKHTGERPYQCKTCLKTFTRSDSLRVHSFIHTGERPYVCDLCGQSFTQKGSMMIHRRKHPGDHPPPPHPPLILSRLENNEH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01418520; iTF_01417876;
90% Identity: iTF_01418520;
80% Identity: -