Thoc001869.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tetragonula hockingsi
Gene Symbol
Dis3l2
Assembly
GCA_010645185.1
Location
WIUV01013080.1:90-2946[-]

Transcription Factor Domain

TF Family
CSD
Domain
CSD domain
PFAM
PF00313
TF Group
Beta-Scaffold Factors
Description
In molecular biology, the cold-shock domain (CSD) is a protein domain of about 70 amino acids which has been found in prokaryotic and eukaryotic DNA-binding proteins. When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees Celsius, a 4–5 hour lag phase occurs, after which growth is resumed at a reduced rate.During the lag phase, the expression of around 13 proteins, which contain cold shock domains is increased 2–10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid.
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 0.031 3e+02 2.6 0.0 14 38 117 140 110 158 0.75
2 2 1.9e-08 0.00018 22.5 0.0 30 70 213 253 179 255 0.85

Sequence Information

Coding Sequence
ATGTCAAACGAATCAATTCCTTCGGATTGTGTTGCACAAAATCAGCCCAAAATTGAGAAGTTTGGTCGTAAAACTAGCAGGAGGAGAAATAAAGGGAAAACCTCCGATAAACGATCAGTTTCTGTTGATGTTGAAccagaagaagagaaagatatcgaaattcaaacatcCAAGTCTTCGAGGCAAAGAGAAACGTTTTCGCAATATATTCCTGAGAAACAAATTGATAAACTTTTAAGAAATGAAGATTCCAATGGAAGACAATATATAGAAGGCCAATTACGTATTAATCCATGGTGTCATAAATATGcttatttatctttatccGACGATCAATATGACCTATTAATTGTGGGCTTAAAGGATAGAAATCGGGCTTTTGATGGAGATTTTGTCGTGGCATGTATAAATCAACCAGACAAATGGCATATGCATCGAGGACAGACGCAAAAAACAGGTGTCGTTGTTTATATACGGGAAAAAGTACATCCGAGGAAAACAGTGGGATGTTTCAAACAACGAGGTGcattcacatttttatatcCCAGAGATCATCGCATACCGCTGGTTAAAATAAGTAAGGAATCGTTGCAACAGTTCGGTGTATGTCCAAGTAGTTATGAAGATACGTTATATTTGGTCGTTATAACTGATTGGGTAAAACCAAAGTTTGCAGTTGGgaaaattgaaaaagtacTTGGGAACATCGGCGATATAAAAGCAGAGACGAATGCAATATTGCTTGAATATGATTTAGATGTTACACCTTATGGCCCGGACGTAATGAAAGGGCTTCCAAATAGCGATTATTCTTTAACagaaaatgatgtaaaaaacAGAGAAGATTGGAGAGGTGAATGCATATTTACTATCGATCCTGACAATGCCGTTGATTTAGATGATTCAGTTTCTTGCAAATCTTTGGAAAATGGGAATTATGAAatTGGTGTGCATATATCAGATGTCACTCATTACATAGAATTTTTATCTCCGTTAGATATTCAGGTTTCAAAACGTGCTACAACCATATATATGACAGATAATGTATATCATATGTTGCCAAAACAATTATGTCAAGTATGCTCTTTGTCACCTGGCCAGGATAAACTGGCTTTTTCAGTTATTTGGGAGATGACACAAGATGCGAGAgtcgttgaatatcattttGCTAAAACTGTAATCAGATCGTGCTGTCAAATGTCTTATCAGCATGttcagaaattaatcgaaaatccAGAACATAATTGGCCAGatgactttttaaatataaatggaaattacAAACTTAGCGATTTATCAacgaaaataaacattttacacAATCTAGCTACTCAAATGCGTAAGCGAAGATTTCAAAATGGCGCGCTACAAATAGATCAACCAAAATTATATGTTAGAGTCGATAAAACTACGGGTTTAccaatatcgtataatatagAAGAACGACAGGATAGTAACAGACTCATAGAAGAGTTTATGTTGCTAGCGAATATGACAGTTGCTACAGAGCTATACAATACGATTCCGGAGACTGCTTTATTACGTAATCATAGAGAGCCCTCGAAACATATCCTCAATATAACGCAAGATACACTGCAAAAATTCGGTATTCATTTAGATGTTAATTCGTCTGCATCTTTACATGCTAGTATAAAACGTTATGAACAAGAATTAGAAACTGAAAATGATGACACAAgaacaacgatgaaatacagGATGATGGTTATTAACAATCTTTGTTCCAAAGCTATGACTCGAGCGACTTACATATGTTCGTCTTCGGTAAAAGCAGAAGAGGAATTGAGACATTACGCTTTAAACGTATCGCTTTATACACATTTTACTTCTCCAATTAGACGATATTCTGATTGTATCGTACATCGTTTACTTTATTCGACTCTAAAAAATGTAGAGATGCCTAAAGAATGGACTAAAAAACTGTGTAAAtcAATAGCAgcaaattgtaatataaagaaatacagCGCAAAAATGGCTCAAGAACGAAGTAGCGAgttgtattttacatatttggtAGACTTAAAGGGTCCTATGATTGCAATGGGTATTGTTTTGagtgtaaatgaaaattttgtaaacgtTATATTATGTCAACTTGGTACAAAATTAAGGCTTTCCTTTACTCAGTTAGAAAATTTAGCAGACGTCGAATATTCTTCGGAATGTTCTGTTccaacgataaatattttttggaaacAACCTCCTGTTACTCAggtaataaatgtttttactttattgtatttaaGGATCGAAAAACATCCTgaatcttttcaattaattggTAACTTTTTACCGCCGAATTCCGAATCAGAAATTTTACTGTAA
Protein Sequence
MSNESIPSDCVAQNQPKIEKFGRKTSRRRNKGKTSDKRSVSVDVEPEEEKDIEIQTSKSSRQRETFSQYIPEKQIDKLLRNEDSNGRQYIEGQLRINPWCHKYAYLSLSDDQYDLLIVGLKDRNRAFDGDFVVACINQPDKWHMHRGQTQKTGVVVYIREKVHPRKTVGCFKQRGAFTFLYPRDHRIPLVKISKESLQQFGVCPSSYEDTLYLVVITDWVKPKFAVGKIEKVLGNIGDIKAETNAILLEYDLDVTPYGPDVMKGLPNSDYSLTENDVKNREDWRGECIFTIDPDNAVDLDDSVSCKSLENGNYEIGVHISDVTHYIEFLSPLDIQVSKRATTIYMTDNVYHMLPKQLCQVCSLSPGQDKLAFSVIWEMTQDARVVEYHFAKTVIRSCCQMSYQHVQKLIENPEHNWPDDFLNINGNYKLSDLSTKINILHNLATQMRKRRFQNGALQIDQPKLYVRVDKTTGLPISYNIEERQDSNRLIEEFMLLANMTVATELYNTIPETALLRNHREPSKHILNITQDTLQKFGIHLDVNSSASLHASIKRYEQELETENDDTRTTMKYRMMVINNLCSKAMTRATYICSSSVKAEEELRHYALNVSLYTHFTSPIRRYSDCIVHRLLYSTLKNVEMPKEWTKKLCKSIAANCNIKKYSAKMAQERSSELYFTYLVDLKGPMIAMGIVLSVNENFVNVILCQLGTKLRLSFTQLENLADVEYSSECSVPTINIFWKQPPVTQVINVFTLLYLRIEKHPESFQLIGNFLPPNSESEILL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00733760;
90% Identity
iTF_01417479;
80% Identity
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