Basic Information

Insect: Tetragonula carbonaria
Gene Symbol: -
Assembly: GCA_010645115.1
Location: WIUU01006125.1:5631-7301[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.3e-06 0.00046 21.1 0.4 3 23 285 306 283 306 0.96

2 9 0.053 7.4 7.8 0.9 1 23 310 332 310 332 0.96

3 9 0.014 2 9.6 4.2 2 23 339 361 338 361 0.95

4 9 0.00014 0.019 16.0 0.3 1 23 368 391 368 391 0.95

5 9 0.14 20 6.5 0.2 1 12 396 407 396 410 0.85

6 9 7.6e-05 0.01 16.8 1.6 3 23 428 448 426 448 0.97

7 9 2e-05 0.0028 18.6 0.8 1 23 452 475 452 475 0.97

8 9 2e-05 0.0027 18.6 1.4 2 23 480 501 480 501 0.98

9 9 5.7e-07 7.9e-05 23.5 1.0 1 23 507 529 507 529 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.3e-06	0.00046	21.1	0.4	3	23	285	306	283	306	0.96
2	9	0.053	7.4	7.8	0.9	1	23	310	332	310	332	0.96
3	9	0.014	2	9.6	4.2	2	23	339	361	338	361	0.95
4	9	0.00014	0.019	16.0	0.3	1	23	368	391	368	391	0.95
5	9	0.14	20	6.5	0.2	1	12	396	407	396	410	0.85
6	9	7.6e-05	0.01	16.8	1.6	3	23	428	448	426	448	0.97
7	9	2e-05	0.0028	18.6	0.8	1	23	452	475	452	475	0.97
8	9	2e-05	0.0027	18.6	1.4	2	23	480	501	480	501	0.98
9	9	5.7e-07	7.9e-05	23.5	1.0	1	23	507	529	507	529	0.99

Sequence Information

Coding Sequence: ATGCAACAGCTCGTTATATTTTGTCGCAGAATGCCGGACCGGACGAATGTTAGTCGAGTGCCTGTCTCTCTTAAAATTAATCCGGCTTTCGTACGAAGCTCGAGGGAATgtaaaaaaatcgtacaaaattCTAACGAGTCACGCACGTCGAAGAGAGTTGCAGACAGTTTAACCGATAGTTTAACCACGCGGAATGAAATGAACGTCGATTTGATCTCGAACGGGAATGTTATAAGTAATAGCATTTGGTTGAGTCCAGTTGACAGTGATTCATCGTCGACTGGAACGAATAACTGTACGAATACTGAATCAGGAAAGATTCAGCAAGATACAAAGATAGATTCGGTGAAACAGGTGTTGGTTCCAGTCAGAGATCCGGCGACCAACGAGATTAGAAATACGCTGGTGCCAGTCGAGAACGCAGACGCTTCTGGATTGAacgtgattaaaaatattctgataCCGATTTCCGATAAAGATGGTTCGATATCGTACGATGTGAAAAAGGTCGTGGTGCCTATCAAGCGAGAGTCAAATTTGAATCGAACACCAGGGAATAAGGTAATAACAAACATAGTGCAGCCAGTGAAGAACGTGGAAAACGTGAGTACTCCAACGACGTCGACAGACTCggagaacgaaatgaaattgccAGAGGACAATGAGAAGCCGGTACAGGTGGTACAGGTGACATCAGTCGAGAATAAAGTGCAGTGCAAAACAGAAGAATCGACAGATGCCCAAGTGGAGCAGAGAAAGGAAGAGCAAAAGGAGACAGAATCGTTCAAAGTGCCTGGCCCAGCAACCCAGAAAGAGGAGATGGACCGAATActagaaaatttgaagactATCTGTCCAGTTTGTCAAAGGGTGTTCAAAAGCGAGATCATGTTACAAAGGCACATACGTCGATTCCACGAGAAGGTGCATCCGTGTGACAAATGTAACAAATGGTATCCATCGAAACTGCTGCTGCAAGAGCACAAGATATCTCACGAGGACGACTCGTACCTGCAGTGTTCGATGTGCCACTTGAAGTACAAGCGTAAAATTGGACTAAAGTATCATCACATTCGAGTGCACAGCAACATAGAGCCGAAGTACATGTGCGACTACTGCGGCAAACGTTTCAAGTTGAAGATCGATCTCGGCGGCCACATCGAGAAGACGCATCTGAACGTCTCTCACATCTGTAAGATTTGCGGCAAGGTCGTGAAGAACATCACGCACCACGAGTGGCAGCACGACAGGGTCGCCAAAAGGATCGTTTACAAATACGGTTGCAACCTTTGTCGTAAGAAGTTCACAACACGCAACAATTTGGACAATCATCTGCTGATGCACAAGGACGGCTTCAAGTGTACGCTGTGCGACGAGGTGTTCTCCTCGCCGTATTCTCTCGGCAGTCACAAGAGCACGAAACACAGACGCGGTGCGACGTGCACCATCTGCGAGAGATCGTTCACAAGTACGAGCAATTTTTATCAGCACGTGCTCACTCACGCTGGCATCAGGCCGTACAAATGCGACATCTGCGGCGAGGATTTCACGCAGCGATCCAGCGTGCTGAGGCATCGAAAGACTCATCCTGGCCCTCTTCCACCGTTCACCGAAACCACGTCGATAGCGGATATCGCGAAGAACATATTGCAGAAACTTTCGAACGTTTAA
Protein Sequence: MQQLVIFCRRMPDRTNVSRVPVSLKINPAFVRSSRECKKIVQNSNESRTSKRVADSLTDSLTTRNEMNVDLISNGNVISNSIWLSPVDSDSSSTGTNNCTNTESGKIQQDTKIDSVKQVLVPVRDPATNEIRNTLVPVENADASGLNVIKNILIPISDKDGSISYDVKKVVVPIKRESNLNRTPGNKVITNIVQPVKNVENVSTPTTSTDSENEMKLPEDNEKPVQVVQVTSVENKVQCKTEESTDAQVEQRKEEQKETESFKVPGPATQKEEMDRILENLKTICPVCQRVFKSEIMLQRHIRRFHEKVHPCDKCNKWYPSKLLLQEHKISHEDDSYLQCSMCHLKYKRKIGLKYHHIRVHSNIEPKYMCDYCGKRFKLKIDLGGHIEKTHLNVSHICKICGKVVKNITHHEWQHDRVAKRIVYKYGCNLCRKKFTTRNNLDNHLLMHKDGFKCTLCDEVFSSPYSLGSHKSTKHRRGATCTICERSFTSTSNFYQHVLTHAGIRPYKCDICGEDFTQRSSVLRHRKTHPGPLPPFTETTSIADIAKNILQKLSNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00983148;
90% Identity: iTF_01420455; iTF_00873978;
80% Identity: -