Basic Information

Insect: Lepidotrigona ventralis
Gene Symbol: -
Assembly: GCA_002806875.1
Location: NIPQ01090842.1:2965-4641[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.4e-06 0.00045 21.1 0.4 3 23 287 308 285 308 0.96

2 9 0.054 7.2 7.8 0.9 1 23 312 334 312 334 0.96

3 9 0.014 1.9 9.6 4.2 2 23 341 363 340 363 0.95

4 9 0.00014 0.018 16.0 0.3 1 23 370 393 370 393 0.95

5 9 0.15 19 6.5 0.2 1 12 398 409 398 412 0.85

6 9 7.7e-05 0.01 16.8 1.6 3 23 430 450 428 450 0.97

7 9 3.5e-05 0.0046 17.9 1.0 1 23 454 477 454 477 0.97

8 9 2e-05 0.0026 18.6 1.4 2 23 482 503 482 503 0.98

9 9 2.5e-07 3.3e-05 24.6 0.9 1 23 509 531 509 531 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.4e-06	0.00045	21.1	0.4	3	23	287	308	285	308	0.96
2	9	0.054	7.2	7.8	0.9	1	23	312	334	312	334	0.96
3	9	0.014	1.9	9.6	4.2	2	23	341	363	340	363	0.95
4	9	0.00014	0.018	16.0	0.3	1	23	370	393	370	393	0.95
5	9	0.15	19	6.5	0.2	1	12	398	409	398	412	0.85
6	9	7.7e-05	0.01	16.8	1.6	3	23	430	450	428	450	0.97
7	9	3.5e-05	0.0046	17.9	1.0	1	23	454	477	454	477	0.97
8	9	2e-05	0.0026	18.6	1.4	2	23	482	503	482	503	0.98
9	9	2.5e-07	3.3e-05	24.6	0.9	1	23	509	531	509	531	0.99

Sequence Information

Coding Sequence: ATGAGGGAAAGGGCCAAACCATCGAGCCTGATGCAACAGCTCGTTATATTTTGTCGCAGAATCCCGGACCGGACAAATGTTAGTCGAGTGCCTCTCAATCTTAAAATTAATCCGGCTTTCGTACGAAGCTCGAGGGAATGTAAAGAGATTGTACAAAATTCTAACGAGTCACGCACGTCGAAGAGAGTTACAGACAGTTTAACCACGCGGAATCAAACAAACgtcgatttaatttcgaacgGGAATATTGTAAGTAATAGCATTTGGTTGAACCCAGTTAACAGTGATTCATCGTCGACAGAAACGAATAACTGTACGACTGAATCAGGAAAGATTCAGCAAGATACGAAGATGGATTCGGTGAAACAGGTATTGGTTCCAGTCAGAGATCCGGTGACCAACGAGATTAGAAATACGTTGGTACCAATCGAGAACGCAGACGCTTCTGGATTGAacgtgattaaaaatattctgataCCGATTTCTGATAAAGATGGTTTTATATCGTACGATCTGAAAAAGGTGGTGGTGCCTATCAAGCGAGAGTCAAATTTGAATCAAACACCAGGGAATAaggtaataataaacataGTGCAGCCAGCGAAGACCGTGCAAAACGTGAGTACTCCAACGACGTCAAAAGACTTTGAGAGCGAAATGAAATTGCCAGAAGACAATGAGAAGTCGGTGGTACAGCTGGCAGCATTAGTCGAGAATAAAGTGCAGTGCAAAACAGAATTGACAGATGGCCAAATGGAAcagaagagaaaggaagagcaAAAGGAGACGTTGAAAGTGCCTGGTCCAGCAACCCAGAAAGAGGAGATGGACCGAATACTAGAAAACTTGAAAACTATCTGTCCAGTGTGTCAAAGGGTGTTCAAGAGCGAGATCATGTTACAAAGGCACATACGTAGATTCCACGAGAAGGTCCATCCCTGTGACAAATGTAACAAATGGTATCCATCGAAACTGCTGCTGCAAGAGCACAAGATATCTCACGAGGACGACTCGTACCTGCAGTGTTCGATGTGCCACTTGAAGTACAAGCGTAAAATTGGGCTGAAGTATCATCACATTCGAGTGCACAGCAACATAGAGCCGAAGTACATGTGCGACTACTGCGGCAAACGTTTCAAGTTAAAGATCGATCTCGGTGGTCACATCGAGAAGACGCATCTGAACGTTTCTCACATCTGTAAAATTTGCGGCAAGGTCGTGAAGAACATCACGCACCACGAGTGGCAGCACGACAGGGTGGCCAAGAGAATCGTTTACAAATATGGTTGCAACCTTTGTCGTAAGAAGTTCACAACACGCAACAATTTGGACAATCATCTGCTGATGCACAAGGACGGGTTCAAGTGTACGCTGTGCAACGAGGTGTTCTCCTCGCCGTATTCTCTCGGCAGTCACAAGAGCACGAAACATAGACGCGGTGCGACGTGCACCATCTGCGAGAGATCGTTCACCAGTACGAGCAATTTTTATCAGCACGTGCTCACTCACGCTGGCATCAGGCCGTACAAATGCGATATCTGCGGCGAGGATTTCACGCAGCGATCCAGCGTCTTGAGGCATCGAAGGACTCATCCTGGGCCTCTTCCACCGTTCACCGAAACCACGTCGATAGCGGATATCGCGAAGAACATATTGCAAAAACTTTCGAACGTTTAA
Protein Sequence: MRERAKPSSLMQQLVIFCRRIPDRTNVSRVPLNLKINPAFVRSSRECKEIVQNSNESRTSKRVTDSLTTRNQTNVDLISNGNIVSNSIWLNPVNSDSSSTETNNCTTESGKIQQDTKMDSVKQVLVPVRDPVTNEIRNTLVPIENADASGLNVIKNILIPISDKDGFISYDLKKVVVPIKRESNLNQTPGNKVIINIVQPAKTVQNVSTPTTSKDFESEMKLPEDNEKSVVQLAALVENKVQCKTELTDGQMEQKRKEEQKETLKVPGPATQKEEMDRILENLKTICPVCQRVFKSEIMLQRHIRRFHEKVHPCDKCNKWYPSKLLLQEHKISHEDDSYLQCSMCHLKYKRKIGLKYHHIRVHSNIEPKYMCDYCGKRFKLKIDLGGHIEKTHLNVSHICKICGKVVKNITHHEWQHDRVAKRIVYKYGCNLCRKKFTTRNNLDNHLLMHKDGFKCTLCNEVFSSPYSLGSHKSTKHRRGATCTICERSFTSTSNFYQHVLTHAGIRPYKCDICGEDFTQRSSVLRHRRTHPGPLPPFTETTSIADIAKNILQKLSNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00983148;
90% Identity: iTF_01418528;
80% Identity: -