Tcar023536.1
Basic Information
- Insect
- Tetragonula carbonaria
- Gene Symbol
- -
- Assembly
- GCA_010645115.1
- Location
- WIUU01002289.1:17094-19457[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.4e-05 0.0019 19.1 3.7 2 23 261 282 260 282 0.97 2 15 0.0033 0.46 11.6 3.9 1 23 288 311 288 311 0.97 3 15 3.7e-06 0.00051 20.9 1.4 2 23 392 413 391 413 0.97 4 15 1.1e-05 0.0015 19.5 2.0 1 23 419 441 419 441 0.98 5 15 0.00054 0.075 14.1 0.3 1 23 447 469 447 469 0.97 6 15 2.1e-07 3e-05 24.8 0.9 1 23 484 506 484 506 0.98 7 15 2.3e-06 0.00032 21.6 1.0 1 23 512 534 512 534 0.98 8 15 6.9e-06 0.00096 20.1 2.3 1 23 540 562 540 562 0.98 9 15 0.00061 0.085 13.9 0.2 1 23 568 590 568 590 0.99 10 15 8.1e-06 0.0011 19.9 0.3 1 23 596 619 596 619 0.93 11 15 1.4e-05 0.0019 19.1 1.3 1 23 625 647 625 647 0.98 12 15 0.0003 0.042 14.9 4.7 1 23 653 675 653 675 0.98 13 15 4.5e-06 0.00063 20.6 0.2 1 23 681 704 681 704 0.96 14 15 3e-06 0.00042 21.2 0.6 1 23 710 732 710 732 0.96 15 15 2.7e-06 0.00037 21.4 4.5 1 23 738 760 738 760 0.99
Sequence Information
- Coding Sequence
- ATGCCGGTACAATTGACTCGCAGTTACAAGTACTTTCTCGTTTATGAGGATCAAATATCTAGATTCGTTGTATTGAAAGGTTTACGTGGAAACACGGCGAACGAAGTAGCCGTAAAACTATTGGACGTGCTGGCTATCATTGGTGCGCCGCAGGTGTTACAAAGCACTAACGGACGTAAATTCGCCAAGGAGGTTGTGCAAGAGTTGCGCCTTCTATGGAAAGACTTTATGATACTTCACGGGGAAATCACCGAGAGAAATGGACAGAGCAGAGATTTTAAAAGCTTGCTGGAATGTTGGGTGGAGGAGAATCCGACGAAGACATGGCACGAAGCTCTGAAACACGTacaaatctttcaaaattcaacgttCCGTTGTGAAAATGGAAAGATTCcgtacgatatattatttgGGAGGAATGTACACAAGGAGTTCCAAAAACGGACTAACGTGATAAACTCGACATGGGATAATATATGGGCCGAAGAAGAATGGATTGGTTTGCTATCCAACAGTGAAGATGAAGTTAAGAAGGAAGATAGGCAACAATTTATAGAAGACTCGACTTTTGCGAACGTCAGAGATACGGATACTTTCAATGACTATGAGGATGAAGACTCTGATAGTGAAGCCAAGGATGAACTTCAAAGGGACACTCctgatttcaatttcgtgaATGTTAAGAGTGAACCTTTGAACATGCACACGGAAGACTTGGCATTTGAGGACGAATCGGGAATAGACGACAAAGCGTCGAACGTAGAGAACCAAGTCGACTTGAAGTGTAAAGTCTGCAAGAAGCAGTACATGAAACCCGGCCACTTGAAAAATCACATGAGAACGCATTTAAAGGGAAAGAAGTTTGAGTGTAAACTGTGCAACAAAACGTTCCACGTTCTAAACTTGTACGAAAAACACACGAGGCAGTCACACAAACAAAGTAAATTGTCCAACTTGAGTAGAAGCAAGAGAAGCAAAAACTTGCAAGATGACGCGATATTAGACGCGAAAGCACCTAAATTGAGAAGCTTCGCAGAGTCGAACGCTGACGAGACACAATCCAGCGAAGCAAATAACCGTACAAAGGTGGAAAGGAGTTTGAGTCTTctgaaggagaagaagaagatcacCTCCGACAGTCGGTCGATGAAACTAAACGGAGATCCAACTCTAGAATGTTCGTACTGCAATCAAAAGTTCAACTTTCCCAGCGTGTTGAAAAGGCACATGCGATCTCACACGAACGAAAGGCCGTACGTCTGTTTGATTTGCAACAAGAGCTTCAAACAGCTGGGCCATCTCAGCCAGCATTCACTGACGCACAAGGATTATCGTTCTTTCCACTGTGCGGTCTGCGGGGTGAAGTTCGAGTCGCTGGGTTCGCTGAAAGTCCACGCTCAATCGCACAAAGAAGACTACATCTCAAAGGCTAAAGAGACCTTCCGTCTGTTCGAGTGCGACAATTGCAAAAAGGTGTTTACCACCAAAAGCGTTCTGGAGAGGCACATACTCACCCATTCTCACGAACGTCAGTTCCCGTGTTTCGTCTGCGGCAAGAGGTTCAAACAAGCGGGACACGTGAAGTCTCACATGCTGGTGCACACGGGCGAACGGAAATTCGAGTGCACCGTTTGTAAGAAGAGATTCAGCCTCTCGAATTCTCTGAAGAAACACATGTACGTTCACAACGGTGAGAAACCGTACCAGTGCGACGTGTGCGGCGCGCGATTCCTCGAGAAGAGGAACCTGAACGGACATCTGATGACCCACACGAACGAGCGTCCATTCCGCTGTAAAATATGCGGGAAGAGGTACACTCTGGCGGACACGTTGCGTCGGCACGTGAGCGCCGCCCACGAGGACGGACGCACCTATCAGTGCGAGATCTGCGCGAAAATGTTCAAGCAGCTTGCCCACCTGTCCGTTCACAAAAAGGTGCACAACGACGAGCGGCCGTTCCAGTGTCATTTGTgcgagaagaatttcaaacaCAAGAACGTACTTAAGTCTCACTTGGCCATTCACGCGAACGTCAGACCGTTCGAATGCGACGTGTGCAAAGCCACGTTCGTGAGGAAAACAAATCTGCAGACGCACATCGCGTCCGCCCATATGAACGAAAGACCGTACGTTTGCACCATTTGTGGCAAGCGGTTCAAGCAGATCAGCCACTTGAACGGCCACGTGGTGGTGCATAGCAATTTAATGCCTTATCAATGCGATTTCTGTGATCGGCGGTGCAACAGACTCGACAACCTGAAGAAACACATGCGTCTTCATACGAAGAACAAAGAATGA
- Protein Sequence
- MPVQLTRSYKYFLVYEDQISRFVVLKGLRGNTANEVAVKLLDVLAIIGAPQVLQSTNGRKFAKEVVQELRLLWKDFMILHGEITERNGQSRDFKSLLECWVEENPTKTWHEALKHVQIFQNSTFRCENGKIPYDILFGRNVHKEFQKRTNVINSTWDNIWAEEEWIGLLSNSEDEVKKEDRQQFIEDSTFANVRDTDTFNDYEDEDSDSEAKDELQRDTPDFNFVNVKSEPLNMHTEDLAFEDESGIDDKASNVENQVDLKCKVCKKQYMKPGHLKNHMRTHLKGKKFECKLCNKTFHVLNLYEKHTRQSHKQSKLSNLSRSKRSKNLQDDAILDAKAPKLRSFAESNADETQSSEANNRTKVERSLSLLKEKKKITSDSRSMKLNGDPTLECSYCNQKFNFPSVLKRHMRSHTNERPYVCLICNKSFKQLGHLSQHSLTHKDYRSFHCAVCGVKFESLGSLKVHAQSHKEDYISKAKETFRLFECDNCKKVFTTKSVLERHILTHSHERQFPCFVCGKRFKQAGHVKSHMLVHTGERKFECTVCKKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFRCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYVCTICGKRFKQISHLNGHVVVHSNLMPYQCDFCDRRCNRLDNLKKHMRLHTKNKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00684907;
- 90% Identity
- iTF_01420396; iTF_00873925; iTF_00983721; iTF_01417843; iTF_01419767; iTF_00734077; iTF_00982429; iTF_00983101; iTF_01421053;
- 80% Identity
- iTF_01419767;