Fvar009502.1
Basic Information
- Insect
- Frieseomelitta varia
- Gene Symbol
- -
- Assembly
- GCA_011392965.1
- Location
- WNWW01000666.1:34834-38879[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.2e-05 0.00074 19.1 3.7 2 23 283 304 282 304 0.97 2 15 0.00032 0.02 14.6 3.6 1 23 310 333 310 333 0.97 3 15 3.1e-06 0.00019 20.9 1.4 2 23 414 435 413 435 0.97 4 15 9.2e-06 0.00057 19.4 2.0 1 23 441 463 441 463 0.98 5 15 0.00047 0.029 14.1 0.3 1 23 469 491 469 491 0.97 6 15 1.8e-07 1.1e-05 24.8 0.9 1 23 506 528 506 528 0.98 7 15 4.3e-05 0.0027 17.3 0.5 1 23 534 556 534 556 0.93 8 15 6e-06 0.00037 20.0 2.3 1 23 562 584 562 584 0.98 9 15 0.00053 0.033 13.9 0.2 1 23 590 612 590 612 0.99 10 15 6.9e-06 0.00043 19.8 0.3 1 23 618 641 618 641 0.93 11 15 1.2e-05 0.00074 19.1 1.3 1 23 647 669 647 669 0.98 12 15 0.00026 0.016 14.9 4.7 1 23 675 697 675 697 0.98 13 15 3.9e-06 0.00024 20.6 0.2 1 23 703 726 703 726 0.96 14 15 2.6e-06 0.00016 21.2 0.6 1 23 732 754 732 754 0.96 15 15 2.3e-06 0.00014 21.3 4.5 1 23 760 782 760 782 0.99
Sequence Information
- Coding Sequence
- atgAATTCACATTGCAACGCCGCGAACAAAAAGTTGTATCACAGAGGACAAATTGATGTGTTAGACATGCCGGTACAATTGACTTGCAGTTACAAGTACTTTCTCGTTTACGAGGATCAAATATCCAGATTTGTTGTATTGAAAGGTTTGCATGGAAACACAGCGAACGAAGTGGCCGTGAAACTGTTGGACATCCTGGCTATCATTGGGGCGCCGCAGGTGTTACAAAGCGCCAATGGACGTAAATTTGCCAAAGAAGTTGTGCAAGAGTTGCGTCTTCTGTGGAAAGACTTTATGATACTTCACGGGGAGATCGCTGAGAGGAATGGGCAGAGCAGAGATTTCAAGAGCTTGCTTGAATGTTGGGTGGAGGAGAATCCGACAAAGACATGGCACGAAGCTCTGAAGCACATAcaaatctttcaaaattcaacgTTCCGTTGTGAAAATGGAAAGATTCCGTACGACATATTATTTGGGAGAAATGTACACAAAGAGTTCCAAAAACGGACTAACGTGATAAATTCGACGAGGGATAATGTTTGGGCCGAGGAAGAATGGATTGGTTTGCTATCCAACGATCAAGACGAGGTTAAGAAGGAAGATAGGCAACAATTTATAGAGGACTCAACTTTTGCGAACGTCAGAGATACAGATACTTTCAATGACTACGAGGATGAAGACTCTCGTAGTGAAACCAAGGATGAACTTCAAAGGGACACTCctgatttcaatttcgtgaATGTTAAGAGCGAACCTTTGAACATGCACGCAGAAGACTTGGCATTTGAGGATGAATCGGGAATAGACGACAAAGTGTCGAACGCAGAGAATCAAGCTGACTTGAAGTGTAAGGTCTGCAAGAAACAGTACATGAAACCTGGCCACTTGAAGAATCACATGAGAACGCATTTAAAGGGGAAGAAGTTTGAATGTAAACTATGCAACAAAACGTTCCACGTTCTAAACTTGTATGAAAAACACATGAGGCAATCGCACAAACAAAGTAAACTGTCCAACTTGAGCAGAAGTAAGAGAAGCAAAAACTTGCAAGACGACGTGATATCAGACGCGAGAGCACCTAAATTGAGAGGCTTCTCAGAGTTGAACGCAGACGAGACACAACCCAGCGAAGCGAATAACTGTACAAAAGCGACGAAGAGTTTGAGTCTTCtcaaggagaaaaaaaagatcactCCCGACAGTCGGTCAATGAAGATAAACGGAGATCCAACTTTAGAATGCTCGTATTGCAATCAAAAGTTCAACTTTCCCAGCGTGTTGAAAAGGCACATGAGATCTCATACGAACGAAAGGCCCTACGTCTGTTTGATCTGCAACAAGAGCTTCAAACAGCTGGGTCATCTCAGCCAGCATTCGCTGACGCACAAGGATTATCGCTCTTTCCACTGTGCGGTTTGCGGCGTGAAGTTCGAGTCGCTGGGCTCACTGAAGGTCCACGCTCAGTCGCACAAAGAAGATTACATTTCAAAGACTAAAGAGACGTTCCGTCTGTTCGAGTGCGACAACTGTAAAAAGGTATTCACCACGAAAAGCGTTCTGGAGAGGCACATACTCACACATTCTCACGAACGCCAGTTCCCGTGCATCGTCTGCGGGAAGAGGTTCAAACAAGCGGGGCACGTGAAGTCTCACATGCTGGTGCACACGGGGGAACGGAAATTCGAGTGCACGGTCTGTAAGAAGAGATTCAGCCTGTCGAATTCTCTGAAGAAACATATGTACGTTCACAACGGTGAGAAACCGTACCAGTGCGACGTGTGTGGCGCGCGATTCCTCGAGAAGAGGAACCTGAACGGACATCTGATGACCCACACGAACGAGCGCCCGTTCCGCTGTAAAATCTGCGGGAAAAGGTACACTTTGGCGGACACGTTGCGTCGGCACGTGAGCGCCGCGCACGAGGACGGGCGCACCTATCAGTGTGAGATCTGTGCGAAAATGTTCAAGCAGCTTGCCCACCTATCCGTTCACAAAAAGGTGCACAACGACGAGCGGCCATTTCAGTGTCATCTGTGCGAGAAGAATTTCAAGCACAAGAACGTACTTAAGTCTCACCTGGCCATTCACGCGAACGTGAGGCCGTTCGAGTGCGACGTGTGCAAAGCCACGTTCGTGAGGAAGACGAATCTGCAGACGCACATCGCGTCGGCCCATATGAACGAAAGGCCATATGTTTGCACCATCTGTGGCAAACGGTTCAAGCAAATTAGCCACTTGAACGGCCACGTGGTAGTGCATAGCAATTTAATGCCTTATCAATGCGATTTCTGTGATCGGCGGTGCAACAGACTCGACAATCTGAAGAAACACATGCGTCTTCATACAAAGAACAAAGAATGA
- Protein Sequence
- MNSHCNAANKKLYHRGQIDVLDMPVQLTCSYKYFLVYEDQISRFVVLKGLHGNTANEVAVKLLDILAIIGAPQVLQSANGRKFAKEVVQELRLLWKDFMILHGEIAERNGQSRDFKSLLECWVEENPTKTWHEALKHIQIFQNSTFRCENGKIPYDILFGRNVHKEFQKRTNVINSTRDNVWAEEEWIGLLSNDQDEVKKEDRQQFIEDSTFANVRDTDTFNDYEDEDSRSETKDELQRDTPDFNFVNVKSEPLNMHAEDLAFEDESGIDDKVSNAENQADLKCKVCKKQYMKPGHLKNHMRTHLKGKKFECKLCNKTFHVLNLYEKHMRQSHKQSKLSNLSRSKRSKNLQDDVISDARAPKLRGFSELNADETQPSEANNCTKATKSLSLLKEKKKITPDSRSMKINGDPTLECSYCNQKFNFPSVLKRHMRSHTNERPYVCLICNKSFKQLGHLSQHSLTHKDYRSFHCAVCGVKFESLGSLKVHAQSHKEDYISKTKETFRLFECDNCKKVFTTKSVLERHILTHSHERQFPCIVCGKRFKQAGHVKSHMLVHTGERKFECTVCKKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFRCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYVCTICGKRFKQISHLNGHVVVHSNLMPYQCDFCDRRCNRLDNLKKHMRLHTKNKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00684907;
- 90% Identity
- iTF_01418475;
- 80% Identity
- -