Tcar014090.1
Basic Information
- Insect
- Tetragonula carbonaria
- Gene Symbol
- -
- Assembly
- GCA_010645115.1
- Location
- WIUU01000862.1:32415-36111[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.9e-13 1.5e-09 38.0 0.0 1 39 261 300 261 304 0.90 2 4 1.5e-12 4.6e-09 36.4 0.1 2 39 316 353 315 356 0.94 3 4 5.4e-19 1.6e-15 57.1 0.0 2 45 371 415 370 415 0.97 4 4 6.2e-19 1.9e-15 56.9 0.1 1 42 422 464 422 465 0.97
Sequence Information
- Coding Sequence
- ATGAAACTCTATCCGCTGAAACGAACCTCACTGTTGAAAACAGCCGATCAACTAAAGATCAAGGGACTTTGCGAAGTGCCGGAAAGCAGAGACGGCCCACCCTCGGTAAGCCTGAGTTCGCCACCAAGGGAACCCGGCACTCCTAGAATAAATTTCACCAAGCTGAAGAGACATCATCAAAGGTACAAAAGGCCTAGAACGACGTTCGAACCTCGCGCTACAGATTCGAGGCATTACGATCGATATAAAGAAGaggaatcgaacgaaaattacgaCTGGGAGAACAAAGAGAATCACATAGACTGGCAACCCGAAGATGAGGAGTGTACGGAGGCAACTGCGGGAGCAGTAGTGCTGGAAAATTGCCAACGCAACAcAATAATAACTCCACCGGCAACGGTAACAATACGagcaacaacaataacaacgGTGATATGTTTTGTCATACAGGTCTCGGTCATTACGGTCATCATCCGGATCCCGGCGAGGGACCCGGATCATCATTCCACAGAGATTCAGAATTGTGACAGTGTAAAGATAAAGTTTGAAACGTTGCACACAATGGACTCGTCGGACACGATTGATATCGATAGCCACATGTCGGATCGTGCGAGCGTTAGTTCAAAGAACGCAGCCGATAGCGACAACATGATGATGATCACACCGGAATTGCTTGGATTGATGCCTTCTGGAAGCTCGATACACTCGGATTCTGGCGAGACTAACTCGAGGGGCCATTCCGGCCAATCCAGCTCTCATCATCACGGTTCAAAATCATGGACTCAAGAGGACATGGACGCTGCTTTGGAAGCCTTACGGAATCACGATATGAGCCTTACAAAAGCCTCTGCAACGTTCGGCATACCATCGACGACTTTGTGGCAACGAGCGCATCGGTTGGGAATCGACACTCCGAAAAAAGACGGACCTACGAAATCGTGGAGCGACGAGAGTTTAAACAACGCGCTCGAAGCACTACGGACCGGCACGATATCAGCGAACAAAGCTTCAAAAGCATTTGGAATACCGTCGAGTACCTTGTATAAAATCGCGAGAAGGGAAGGCATCAGGCTGGCTGCGCCTTTCAATGCAAGCCCAACCACCTGGTCGCCTGCCGATCTCGATCGTGCCCTCGAAGCGATACGTTCCGGCCAAACGTCTGTGCAGAGGGCGTCGACGGAATTCGGTATACCAACAGGAACGTTGTACGGCCGATGCAAAAGAGAGGGCATCGAACTTAGCAGGAGTAATCCTACACCTTGGAGCGAAGATGCTATGACCGAGGCCCTCGAGGCTGTCAGATTAGGCCATATGAGCATTAATCAGGCGGCAATCCACTATAATTTGCCGTACTCGTCCTTGTACGGTCGTTTCAAGAGGGGAAAATACGAAGAACCAGCGGTGGGCGAGATATCGCAAGACGGTAGCAGTCCTCATTTTCATCAAAGCCCGAGTCAAAATCATTCGTCCGCTATACCCGATCAAATGTCGTACCAAGGCAGCTGA
- Protein Sequence
- MKLYPLKRTSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFTKLKRHHQRYKRPRTTFEPRATDSRHYDRYKEEESNENYDWENKENHIDWQPEDEECTEATAGAVVLENCQRNTIITPPATVTIRATTITTVICFVIQVSVITVIIRIPARDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSIHSDSGETNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGEISQDGSSPHFHQSPSQNHSSAIPDQMSYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00306165;
- 90% Identity
- iTF_01419554;
- 80% Identity
- iTF_01419554;