Basic Information

Insect: Tetheella fluctuosa
Gene Symbol: -
Assembly: GCA_951216915.1
Location: OX578244.1:4032914-4047389[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0039 0.3 12.3 0.6 1 23 357 379 357 379 0.98

2 11 0.00079 0.061 14.5 7.4 1 23 386 408 386 409 0.95

3 11 0.075 5.8 8.3 1.8 1 23 413 435 413 435 0.97

4 11 0.84 65 5.0 3.5 1 23 440 463 440 463 0.97

5 11 0.0038 0.29 12.3 0.2 1 23 467 490 467 490 0.94

6 11 4.6 3.6e+02 2.6 0.1 2 20 503 521 503 523 0.83

7 11 1.6 1.2e+02 4.1 0.4 2 23 581 603 580 603 0.94

8 11 0.02 1.5 10.1 0.5 2 20 619 637 618 640 0.91

9 11 2.7e-05 0.0021 19.1 1.4 1 23 646 668 646 668 0.99

10 11 4.8e-05 0.0037 18.3 4.5 1 23 675 697 675 697 0.97

11 11 4e-05 0.0031 18.6 1.3 1 23 703 726 703 726 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0039	0.3	12.3	0.6	1	23	357	379	357	379	0.98
2	11	0.00079	0.061	14.5	7.4	1	23	386	408	386	409	0.95
3	11	0.075	5.8	8.3	1.8	1	23	413	435	413	435	0.97
4	11	0.84	65	5.0	3.5	1	23	440	463	440	463	0.97
5	11	0.0038	0.29	12.3	0.2	1	23	467	490	467	490	0.94
6	11	4.6	3.6e+02	2.6	0.1	2	20	503	521	503	523	0.83
7	11	1.6	1.2e+02	4.1	0.4	2	23	581	603	580	603	0.94
8	11	0.02	1.5	10.1	0.5	2	20	619	637	618	640	0.91
9	11	2.7e-05	0.0021	19.1	1.4	1	23	646	668	646	668	0.99
10	11	4.8e-05	0.0037	18.3	4.5	1	23	675	697	675	697	0.97
11	11	4e-05	0.0031	18.6	1.3	1	23	703	726	703	726	0.95

Sequence Information

Coding Sequence: atgaGATGCTGTGTTGTTGGCTGTAAGAATGACTCCAGACATATATCCAAGTCTCAAGGAATTACATTTCACGTCTTCCCCAATGGACCGTCACTACGCTCAGCATGGTTGCGAGCTCTCAGCAAGGAGGGTTGGGAGCCGAAGGAACGCAGTGCAGTTTGCTCCGAGCACTTTCTGTCTGATGACCTGTATGAGACTAAGAGTGGGCTCAGGAAAGTACGAGTGGGCGCTGTTCCTATTATAGTGCAGgATGTCACAGATTGTGATTATGGAGAACCAGCTAGTTTGAAGgtatGCAGAATATGTTTAGTGATGGGAAGCAAATTGTTTCCAATAAGAAAGTACAAGTTGGAGCAAGCTTACGAACATCTCACCGGCTTGTCGTTATGTGCAGAAGACAAACTGCCACAGAAGCTTTGCACGGAGTGTGCACAAAAGTTGGTCAATTGCAGCCGCTTCAGGAACAAGAGTTTACGAGCCAACTCTCTTATGTTggagattattaaaaaacaagaGAATctaacaataagaaatataaaaacaataaatagagAAAACAATCAATTAACATcgaatttaaatacaaaactcAACACGCCTAACCACTACGATTTATACATAGAAAATAATGACGAAATACAATACAAAGCACAAGAACCGCCTTCAATACAAGAAGTCAACGTGGATGTGGAGGTAAAACACGAAACAGCAAGTTCTGATGTTGATTATTTGAATGAGAATGATGAACTTGAAAAGGAAGATGATAACGAAGCCGGCGATGATGAATTCGTAGCATCAGACAAAGATTACTCAACGGATGACAGTCTTCCATTAGAGAAACGTCgtcaaaagaaagaaaaagtaaagaaagaaaaggTTGAAAAGGTTAAAAAGGTGCGGAAGAAACAAATTAAAGATCCAACTGAACCTAAAATTGATAGGCGAAGGAAGCCATTTTTAAATGATGAATTAAATGAAACTTTGTTTACGATAACTGATTTGTCTTTCGATGAACAAATAGCTGAAATTAATAAGAGACAAGACAGTGCTAATTATAAGAATTCAGTGTTCAAGTGTACAGAGTGCTTTAAAGGGTTTTTGGATGAAGATGCGTATAACAGTCATATGATTAGACATAcagatCAATGTGGAGAATATTCTTGTGAAATATGCAAGACTCACTTCAAACATCCCCACGCACTCCGCAAGCATATAACAGCGCACCACACACAGAGGTTTAGCTGTAATCAATGTCCGTATGTGACTACGCACAGACAGACGGCCAGGTTGCACGAGAGATGGCACAAGGGAACCAAATACCATTGCCCGCATTGTCAGGATGAATTTGTTAAATTCACAACATACATGGGTCATATACGCATCAAACACCCATCTGACTTCGTGTGCGAACTGTGCGGGTACTCGTTCGTCAGTGCTAAGGGTATAGAATTGCATAAGAAGCTGAAACATCGGTTGGATAATGGTCAGATTCCAGAAGACGGTCCATATTGCGAGCAATGTAACGTAAGGTTTGTATCGATGGAGGCCCACAGGCGACACTTGGTCGTGTCAGCGAGACACTCAGCCACTGACAAGGACTCCAGGGACCCTAATAAGCCTAAGAGGGGCAGGAAGTGTAAGGAAatgagagagaaagagagaCGACCGCGGGAGAAAGAGAGCGACGAAGACAAGAGAAAACTATACCCCAGTCAGATGAGGAAAGCGGAGGGACCTATACCTTGTGAACAGtGTGGTTTACAATTGGAAGACTCCCGCGCTTACCACGGCCACTTCAGACGCATGCATCCGGACAAGAATCGAACCAACTACCCCTCGATGAAGTCGCCGTGTATGTGCGAAGTTTGCGGGAGGATATTTCAGAGCTACGCCCTCCTAAAGGACCACACATGGGTGCACACGGGCGAGCGGCCGTTCAAGTGCGACTCGTGCGGCAAGTCGTTCCGCATGAAGCAGCGGCTCGTCGCGCACCGCCGCGTGCACAGCCAGGAGAAGGCCGTCTACGTGTGCGCGCTCTGCGGGAAGCACTTCTCCACGCACAGCAACCGGCAGAGGCATATGTTTATACACACTGGTCTAAAACCGTTTAAATGTGAAATGTGTGGGAAGGGCTTCAAGCATGCGAGTGAGAAGAGAGCCCACATCACGTATGTACACCTGAAGAAACCCTGGCCGAAGAGGACCAGGGGCAAAAGGAGGGATATACGACAGGGTCAAATGCCTCAACAAGTGTCGAGTGCGAGCGAGATGGATATAGCGCAGGGCATGTGGCCCGCCTGCGACCCCAAGCTCGGGGACATGAATACGATTATGGACGATAAGCCGatgtattataatttgaaaatataa
Protein Sequence: MRCCVVGCKNDSRHISKSQGITFHVFPNGPSLRSAWLRALSKEGWEPKERSAVCSEHFLSDDLYETKSGLRKVRVGAVPIIVQDVTDCDYGEPASLKVCRICLVMGSKLFPIRKYKLEQAYEHLTGLSLCAEDKLPQKLCTECAQKLVNCSRFRNKSLRANSLMLEIIKKQENLTIRNIKTINRENNQLTSNLNTKLNTPNHYDLYIENNDEIQYKAQEPPSIQEVNVDVEVKHETASSDVDYLNENDELEKEDDNEAGDDEFVASDKDYSTDDSLPLEKRRQKKEKVKKEKVEKVKKVRKKQIKDPTEPKIDRRRKPFLNDELNETLFTITDLSFDEQIAEINKRQDSANYKNSVFKCTECFKGFLDEDAYNSHMIRHTDQCGEYSCEICKTHFKHPHALRKHITAHHTQRFSCNQCPYVTTHRQTARLHERWHKGTKYHCPHCQDEFVKFTTYMGHIRIKHPSDFVCELCGYSFVSAKGIELHKKLKHRLDNGQIPEDGPYCEQCNVRFVSMEAHRRHLVVSARHSATDKDSRDPNKPKRGRKCKEMREKERRPREKESDEDKRKLYPSQMRKAEGPIPCEQCGLQLEDSRAYHGHFRRMHPDKNRTNYPSMKSPCMCEVCGRIFQSYALLKDHTWVHTGERPFKCDSCGKSFRMKQRLVAHRRVHSQEKAVYVCALCGKHFSTHSNRQRHMFIHTGLKPFKCEMCGKGFKHASEKRAHITYVHLKKPWPKRTRGKRRDIRQGQMPQQVSSASEMDIAQGMWPACDPKLGDMNTIMDDKPMYYNLKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00762080;
90% Identity: iTF_01252241;
80% Identity: iTF_01416856;