Tflu024916.1
Basic Information
- Insect
- Tetheella fluctuosa
- Gene Symbol
- -
- Assembly
- GCA_951216915.1
- Location
- OX578242.1:2337249-2341364[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0035 0.27 12.4 0.4 1 23 75 98 75 98 0.94 2 18 0.0024 0.19 13.0 2.3 3 23 171 191 169 191 0.96 3 18 0.00013 0.0099 17.0 0.2 1 23 195 217 195 217 0.98 4 18 0.0031 0.24 12.6 0.5 1 23 224 247 224 247 0.97 5 18 0.0027 0.21 12.8 1.0 2 23 255 277 254 277 0.94 6 18 5.1e-06 0.0004 21.4 0.9 2 23 283 305 282 305 0.97 7 18 1.4 1.1e+02 4.3 1.0 1 23 311 334 311 334 0.89 8 18 1.5e-05 0.0011 19.9 1.7 1 23 340 363 340 363 0.98 9 18 0.0098 0.76 11.1 1.2 1 23 459 482 459 482 0.94 10 18 1.4 1.1e+02 4.3 0.2 2 23 509 531 508 531 0.95 11 18 0.0091 0.7 11.2 0.9 1 23 553 575 553 575 0.97 12 18 0.083 6.4 8.1 2.5 1 23 579 601 579 601 0.96 13 18 0.075 5.8 8.3 1.4 1 23 606 629 606 629 0.89 14 18 0.23 18 6.8 3.6 2 23 637 659 636 659 0.92 15 18 0.00045 0.035 15.3 1.9 2 23 667 689 666 689 0.95 16 18 0.0017 0.13 13.4 2.4 1 23 695 717 695 717 0.97 17 18 0.00011 0.0081 17.3 1.6 1 23 723 745 723 745 0.99 18 18 4e-05 0.0031 18.6 5.3 1 23 751 774 751 774 0.98
Sequence Information
- Coding Sequence
- ATGTGTTTATTTTCTAACAGGAAGACACTACAtaGCGTTGCCGGAGCAACAAAAAAGCGACGAAAACGCGCTGTTAAGGAGGAACATGACGACAATGATACAGTAAATAAACTATTGTACCGCGAAAAACACCTGCCCGAAATGAAGAAGCAGTGGCACAATCTCACTACGTTGCTCAAGTACTCTAACGCAACGCCTTTCAAGGATAGAAACGACGCCGGGTATATTTGTGCCTACTGCTTCAAAACTTACCCCGACCCGGATGTTTTACGAGCGCACACTCATAACGACCATGTCAAAGAGAAGCCAACTTATAAAGCCGGCTCAGGAATGGCTAGTTTTGTCGCTCTCCTAGACATCGTCGAcctaaaatgtatattatgcaACCAACCCATAGACAGTATAAAAACTATGATGGAACACCTAGTCACAGACCACGACAAGAAATTCTACCTCGGCGTCACAGATTACTTCCAACCGTTCAAGTTGACTAACGAGCAGCAGATTAACTGCTGTCTCTGCGGTGAGGTGTTCCACAACATGAAACTACTAATGCAGCACATGAATGTGCACTATAGAAACTTTATTTGCACCATCTGTGGCGCGGGTTTCGTGAACAGCTTTCGATTGAACCGACACGAGATGACGCACGCTAAAAAGAAGTCCAGCTACCCTTGCAGGCATTGCGGCCAAGTCTTCGCTGCCGAGTCTAAAAAGAAAGCGCATGTCAATACTGAGCACAAAGGCATAGCCGGTGATAGCGTTTGTCAGATATGTAAGGCTCGGTTTAAGAATTATTATCAGAAGACGAGGCATATGATTCAGGTCCATAACGCTGAGGGCATAAAATGTGATATGTGCGAGAAGAAATTCAATCTAAAGTCAAATCTGATGTTGCACATGCGGAGTGTTCATCTAAAAGAGCGGCCATACGAGTGCTCTGTTTGCAGCATGGGATTCTTCATCAAGAGACACATGCTCGGACACTATATGGCGACGCATACGAATGAGAGGAAATTCAAATGCGAGGTTTGTGGGAAAGCGTACGCTACGCAGAACAGCAAACGTAAACACATGAAGAAAAACCACGGCATATCTAAAAGTAGTATCGGCTGCCAAACgtctaaaattataatagaaccaaaagtaagtaatatacttaaaactttaaaaactgCACCTAAGTTGAGGAGAAACAACGATTGGAGCGTTACTATAACGAAACCAAAAACTGTGACGGAGAATATTAAAAATGACCTCGtgcaaattaataatataagaaatataagAGAAATCGATAAACATCTACATAACATAAGGACTATTTTGCTATGTACAAACGCTACGCCTATAAGGGGTCATGATGGAATCGGATATTCTTGTTGTTTCTGTTTAGAACAATTTCCCGACCCAGCGGATCTAAAACGACATACATTGGAGAAACACGACGACACCGTCAAGATTAAATTCATGATGGGTTATCCCATGGCATCTTACGTTGTCAAACTTGATATAACGCGTTTACAGTGCCATCTCTGCAAGATCGATATTGACAGCTTAGAACAGGTAATCGAACATCTGAAAATGGGACACGACAAAATACTGTACACGGATATAAACAACCATATTTTACCGTTCAAATTTCATGGAGAATCCTTCATCTGTGTGTTCTGCTCAAAGAACTTCGAGCGCTTCAAACTTATTCAAGAGCATATGAATGTTCATTATCGTAACTACATTTGCGATATTTGTAACGCGTCTTTCGTTAACAGGCGAACTCACCAGAATCACAGCAAGCGACATAAGCAAGGGGAGTTCGCTTGCAGTTACTGCACCAAAATATTTGACACGCGAGGGAAGAAACTCAATCATGAAAAATTCGTTCACATCGCTGATCAAAAGAGGAATAAATGCCCTCATTGTCATGAGAAATTTATGAGCTACGCGAAAAAAATGCAGCATATGGTTAACGAGCATGGCGCTCAACCGCTGGTGCTGAAATGTATGGCTTGCGACAGGACTTTTAGCAGCCGAGACAGGCTGACGCGCCACACGAAGCGAGACCACTTGCTGGAGAGGCGTCACGAGTGCAGCCGTTGTGACATGAAGTTCTACGGTCGTAAAGACCTGCTGAATCATATGATTAAGCACACAGGGGTCAGAGAGTACCGTTGCGACGTTTGTCTCAAAGCTTACGGTAGGAAGCACACACTTAGGGAGCATTTGCGTATACACGCTGATGACAGGCGGTTCAAATGCGAACATTGTGGACAGGCGTTTGTTCAGAAGTGCAGTTGGAAGAGTCACATGCGATCTAAGCATGGGGAAATGGTACATTGA
- Protein Sequence
- MCLFSNRKTLHSVAGATKKRRKRAVKEEHDDNDTVNKLLYREKHLPEMKKQWHNLTTLLKYSNATPFKDRNDAGYICAYCFKTYPDPDVLRAHTHNDHVKEKPTYKAGSGMASFVALLDIVDLKCILCNQPIDSIKTMMEHLVTDHDKKFYLGVTDYFQPFKLTNEQQINCCLCGEVFHNMKLLMQHMNVHYRNFICTICGAGFVNSFRLNRHEMTHAKKKSSYPCRHCGQVFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMIQVHNAEGIKCDMCEKKFNLKSNLMLHMRSVHLKERPYECSVCSMGFFIKRHMLGHYMATHTNERKFKCEVCGKAYATQNSKRKHMKKNHGISKSSIGCQTSKIIIEPKVSNILKTLKTAPKLRRNNDWSVTITKPKTVTENIKNDLVQINNIRNIREIDKHLHNIRTILLCTNATPIRGHDGIGYSCCFCLEQFPDPADLKRHTLEKHDDTVKIKFMMGYPMASYVVKLDITRLQCHLCKIDIDSLEQVIEHLKMGHDKILYTDINNHILPFKFHGESFICVFCSKNFERFKLIQEHMNVHYRNYICDICNASFVNRRTHQNHSKRHKQGEFACSYCTKIFDTRGKKLNHEKFVHIADQKRNKCPHCHEKFMSYAKKMQHMVNEHGAQPLVLKCMACDRTFSSRDRLTRHTKRDHLLERRHECSRCDMKFYGRKDLLNHMIKHTGVREYRCDVCLKAYGRKHTLREHLRIHADDRRFKCEHCGQAFVQKCSWKSHMRSKHGEMVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01252046;
- 90% Identity
- iTF_01416099; iTF_01252046;
- 80% Identity
- -