Tocu021873.1
Basic Information
- Insect
- Tethea ocularis
- Gene Symbol
- -
- Assembly
- GCA_963555595.1
- Location
- OY741985.1:3711629-3715183[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0014 0.091 13.7 0.1 1 23 65 88 65 88 0.95 2 18 0.0059 0.38 11.8 2.5 3 23 161 181 159 181 0.96 3 18 0.00013 0.0083 17.0 0.2 1 23 185 207 185 207 0.98 4 18 0.0031 0.2 12.7 0.5 1 23 214 237 214 237 0.97 5 18 0.0027 0.17 12.8 1.0 2 23 245 267 244 267 0.94 6 18 5.2e-06 0.00033 21.4 0.9 2 23 273 295 272 295 0.97 7 18 1.4 90 4.3 1.0 1 23 301 324 301 324 0.89 8 18 1.5e-05 0.00095 20.0 1.7 1 23 330 353 330 353 0.98 9 18 0.21 14 6.9 1.1 1 23 449 472 449 472 0.94 10 18 0.031 2 9.5 0.2 2 23 499 521 498 521 0.95 11 18 0.0055 0.35 11.9 1.5 1 23 543 565 543 565 0.98 12 18 0.00041 0.026 15.4 1.2 1 23 569 591 569 591 0.98 13 18 1.1 70 4.6 0.8 1 23 596 619 596 619 0.89 14 18 1.9 1.2e+02 3.9 2.1 2 20 627 645 626 649 0.78 15 18 0.00045 0.029 15.3 1.9 2 23 657 679 656 679 0.95 16 18 0.00091 0.058 14.3 4.1 1 23 685 707 685 707 0.97 17 18 5e-05 0.0032 18.3 2.6 1 23 713 735 713 735 0.99 18 18 4e-05 0.0026 18.6 5.3 1 23 741 764 741 764 0.98
Sequence Information
- Coding Sequence
- ATGGgcGTTGCCGGAGCAacaaaaaaacgacgaaaacgcgctGTTAAGGAGGAAAGTGACAGCAATGACACAGTAAATAAACTAATGTACCGCGAAAAACACATGCCCGAAATGAAGAAGCAGTGGCACAATCTCACGACGTTGCTCAAGTACTCTAACGCGACGCCTTTCAAGGATAGAAATGACGCCGGATACATTTGTGCCTACTGCTTCAAAACTTACCCCGACCCGGATGTTTTACGGGCGCATACACAAAACGACCATGTCAAAGAGAAGCCGACTTACAAAGCCGGTTCAGGAATGGCCAGTTTTGTTGCACTCCTAGACATCGTCGACCTAAGGTGTATCTTATGCAACCAACCCATAGACAGTATAAAAGCTATGATGGAACATCTAGTCACAGAGCACGACAAGAAATTCTATCTAGGTGTCACAGATTACTTCCAACCGTTCAAGTTGACCAACGAGCAGCAGATTAACTGCTGCCTCTGCGATGAGGTGTTCCACAACATGAAATTACTTATGCAACACATGAATGTACACTACAGAAACTTTATTTGCACCATCTGTGGTGCGGGTTTCGTGAACAGCTTTCGGCTAAACCGACACGAGATGACGCACGCTAAAAAAAAATCCAGTTACCCTTGCAGGCATTGCGGCCAAGTCTTCGCTGCGGAGTCTAAAAAGAAAGCGCATGTCAACACTGAGCACAAAGGAATAGCCGGTGATAGCGTCTGTCAGATATGTAAAGCTCGTTTCAAGAATTACTATCAGAAGACGAGGCATATGATTCAGGTCCATAACGCTGAGGGTATAAAATGTGATATGTGCGAGAAGAAGTTTAATCTTAAGTCAAATCTGATGCTGCACATGCGGAGTGTTCATTTAAAAGAGCGGCCATACGAGTGCTCTGTTTGCAGCATGGGATTCTTCATCAAGAGACATATGCTCGGTCACTATATGGCGACGCATACGAACGAGAGAAAGTTCAAATGCGAAGTTTGCGGGAAAGCGTACGCTACGCAGAACAGCAAGCGTAAACACATGAAGAAAAACCACGGCATATCTAAAAATAGTTTGGCGATGAATAGTATCGGCTGCAAAgcgtctaaaataaaaatagaaccaAAAGTAAGTAATATAGTTAAGACTCTAAAGGCTGCAACTAAGTTGAGGAGAAACAACGATTGGAGCGTTACTATAACAAAACCAAAATCTGTGAAGGAGAATTTGAAAATCAATCCTTTGAGAAAGATCAGAGAAATTGATAAACATCTACATAACATAAGGACAGTTTTGCTATATTCAAATGCTACACCTATAAGGGGTCATGATGGAATTGGATATTCTTGCTGTTTCTGTTCAGAACAGTACCCCGAACCTGCGGATCTGAAGGAACACACATTGCAGAAACATGATAACTCGGACAAGCTTAAATTCATGATGGGGTACCCGATAACATCATACGTTGTTAAACTAGACGTAACGCGATTACAATGCCATCTCTGCGGCATCAATATTGACAGCTTGGAACAGCTTATAGAGCATCTTAAACAGGAACACGATAAAAAGCTGTACACGGATATAAACAGCCACATTTTACCCTTTAAATTCGAAGGAGAATTCTTTACTTGCGTTTTCTGCTCAAAGAACTTTGAGCGATTCAAACTAATTCAAGAGCATATGAATGTTCATTATCGGAATTACATTTGCGATATTTGCAACGCGTCTTTCGTTAACAGGCGAACCTACCAGAATCACAGCAAGAGACATAAGCAAGGGGAGTTCGCTTGCAGCTACTGCGCCAAAATATATGACACACGAGGCAAGAAACTCAATCACGAAAAATTCGTTCACATCGCAGATCAGAAGAGGAATAAATGTCCGCATTGCCACGAGAAATTCTTGAGCTACGCGAAGAAAATGCAACATATGGTCGACGAGCATGGCGCTCAACCGATCGTGCTAAAATGTATGGCATGCGACAGAACTTTTAGCAGCAGAGACAGGCTGACGCGTCATACGAAGAGAGATCACTTGTTGGAGAGAAGGCATGAGTGCAGCCATTGTGATATGAAGTTCTACGGACGTAAAGACCTGTTGAATCATATGATTAAGCACACAGGGGCCAAGGAGTATCGTTGCGATATATGTCTTAAGACATACGGTAGAAAGCACACTCTTAGAGAGCATTTGCGTATACACGCTGATGACAGGCGGTTTAAATGCGAACATTGTGGGCAGGCATTTGTTCAAAAGTGCAGTTGGAAGAGTCACATGCGTTCTAAGCATGGTGAAATGGTGCATTGA
- Protein Sequence
- MGVAGATKKRRKRAVKEESDSNDTVNKLMYREKHMPEMKKQWHNLTTLLKYSNATPFKDRNDAGYICAYCFKTYPDPDVLRAHTQNDHVKEKPTYKAGSGMASFVALLDIVDLRCILCNQPIDSIKAMMEHLVTEHDKKFYLGVTDYFQPFKLTNEQQINCCLCDEVFHNMKLLMQHMNVHYRNFICTICGAGFVNSFRLNRHEMTHAKKKSSYPCRHCGQVFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMIQVHNAEGIKCDMCEKKFNLKSNLMLHMRSVHLKERPYECSVCSMGFFIKRHMLGHYMATHTNERKFKCEVCGKAYATQNSKRKHMKKNHGISKNSLAMNSIGCKASKIKIEPKVSNIVKTLKAATKLRRNNDWSVTITKPKSVKENLKINPLRKIREIDKHLHNIRTVLLYSNATPIRGHDGIGYSCCFCSEQYPEPADLKEHTLQKHDNSDKLKFMMGYPITSYVVKLDVTRLQCHLCGINIDSLEQLIEHLKQEHDKKLYTDINSHILPFKFEGEFFTCVFCSKNFERFKLIQEHMNVHYRNYICDICNASFVNRRTYQNHSKRHKQGEFACSYCAKIYDTRGKKLNHEKFVHIADQKRNKCPHCHEKFLSYAKKMQHMVDEHGAQPIVLKCMACDRTFSSRDRLTRHTKRDHLLERRHECSHCDMKFYGRKDLLNHMIKHTGAKEYRCDICLKTYGRKHTLREHLRIHADDRRFKCEHCGQAFVQKCSWKSHMRSKHGEMVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01252046;
- 90% Identity
- iTF_01417061;
- 80% Identity
- -