Tflu024925.1
Basic Information
- Insect
- Tetheella fluctuosa
- Gene Symbol
- -
- Assembly
- GCA_951216915.1
- Location
- OX578242.1:2391372-2395507[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0015 0.12 13.6 4.1 1 23 53 75 53 75 0.98 2 24 2.8 2.1e+02 3.3 2.0 2 21 103 122 102 125 0.87 3 24 0.41 32 6.0 1.0 2 23 146 168 145 168 0.86 4 24 0.031 2.4 9.5 0.9 1 20 173 192 173 194 0.94 5 24 0.088 6.8 8.1 4.2 1 23 216 239 216 239 0.97 6 24 0.068 5.3 8.4 0.1 2 22 268 288 267 290 0.87 7 24 0.08 6.2 8.2 0.0 2 23 340 362 339 362 0.93 8 24 0.012 0.96 10.7 1.2 1 23 366 389 366 389 0.95 9 24 0.0018 0.14 13.4 0.8 1 23 426 448 426 448 0.97 10 24 0.12 9.5 7.6 0.0 3 23 477 498 475 498 0.92 11 24 0.019 1.5 10.1 0.3 2 23 519 541 518 541 0.94 12 24 0.00052 0.04 15.1 5.0 1 23 546 568 546 569 0.96 13 24 0.0019 0.15 13.3 4.0 1 23 573 596 573 596 0.94 14 24 0.028 2.1 9.6 4.8 2 23 599 621 598 621 0.96 15 24 2.6 2e+02 3.4 0.3 2 20 627 645 626 647 0.92 16 24 0.016 1.3 10.4 2.1 1 23 698 721 698 721 0.95 17 24 1.1 88 4.6 0.1 2 23 750 772 749 772 0.93 18 24 0.00093 0.072 14.3 0.2 1 23 794 817 794 817 0.97 19 24 0.0003 0.023 15.8 0.0 3 23 824 845 822 845 0.94 20 24 1.2e-05 0.0009 20.3 0.2 1 23 850 873 850 873 0.95 21 24 0.011 0.82 10.9 0.8 2 23 879 901 878 901 0.91 22 24 0.00014 0.011 16.9 3.9 1 23 905 928 905 928 0.97 23 24 0.015 1.2 10.5 0.4 2 23 935 956 934 956 0.96 24 24 0.045 3.5 9.0 2.2 1 23 962 984 962 984 0.96
Sequence Information
- Coding Sequence
- ATGGCGTTAGTCATCCAGAATTTTTGTCGTGAATATTCCGATAATATACCGGAAAAACCACAAGCACGTTCTCAACGTTCAAAACTCACACGACGCAGTAATCTAGGCACATTATTCCACAACACAAGCGTTATACCTTTCAAATGGAAGAACGTCTTTATGTGTTTCTACTGCGGGAAACACACGAGCGTTTATGAAGAATTGAAAAAGCACACAAAATCCCACGGAAAATGCACTCTGCAAGAGCATTCCTTCAAGCAGCTGTCTTCTGTAAAACAAGACGTGAAAATCGATATATCAGAATTGGTTTGCAACATCTGCCACTCGTGCTTCGTGTGCTTGGACGACTTAATCGATCATTTGGTTGACGATCATTCGTTAACATACGACAAAGAAACTTTTATGCACATGTGGCAGTTTACTTTGAGCGCCCTTAAATGCCATGAGTGCGACGAAGCTTTTCTATACTATTCATTCTTCATATCTCACGTGTTAGAGAAGCATCCATTGGATACTTATATATGTGACCATTGTGGTGATTTTTTTAACGATCAAAAGGATTTGGATCACCATAAAATAGAGCAAAACATCGTTTACGTTCTTAACATGTCTACGGCCATACCTTTCAGGTACAACAAACTACGTTTCCGCTGCTTTCATTGCTACAATGAATTTACAGAATTTGAGTCCTTGAAGAAACACACGGAGACCATTCATATGAAAGGTGATGTTAAGAAGCTTGGAGGCATGTTGGAGATCAGAAGTGAGAATGCGAAAGTAAACATAGATGTCAACGGTCTATCCTGCAAAATTTGCAAAGAATCGTTTAATGTCTTAGATGTTTTAATCGACCATTTAGTTGCGAAACACGAGGCAAAGTACGACAAGACTGTTGCAAGCGTCTTCAACCCTTTTAAAGTTGCTGAAGATAACATTTCATGCTGTGCTTGTGATATTGAGTTTAGCGGATTATCGGTTTTCGCACACATTAATACTGTGCATTTGAATCAAACTGTAGTTTGCGAGTTCTGTGGGATGGTTTTGAATGATGAGCCTAGTCTTAAATCGCATGTGACAATATTTCACAGTGGTGCTTTCACTTGCAGTAATTGCTATAAGGAGTTCCCATCAGATTTCCAGTTAAAGTTACATAAAGCTAGAATTCACGatgaAAACGGGCCTTCAAGAGCATTCAGTGCTAATTATGCCAGGAGGCGAAATCTACAAATATTATTCAACAATACATCTATGATTCCTTTCAAATGGCGCGGGAAATATATGTGCTTTTACTGCGGCGAGGATGGCACCGACTATAACAATCTAAGGAAACATACGAAAGGTCACGGCATCTGCTCAAAAGACGACCGCGCTATAAAACTAGTCAAAGCTTTCGACAGCGAAGTCAAAATAGATGTATCGGACATAATATGCGAAATTTGTAGCGAACCATTTCCTAATTTTGACGAGGTGGTCACCCATTTGATGTTCAAACACAATCTGCCGTATAATAAAGATGTAGATTTGATGATAGCAACCTATAGGTTGGTTGACCTTAAATGTCTCATTTGCGACGAAACTTTTGACTATTTTCGTAAATTGGTCATTCATGTGAATAATAGTCACCCGGAGAAATGTTTTCAGTGTCATGATTGCGATCAGCAATTCAATAAGAAGAGAGATTTGGACTCGCACGTTCGACTTCACCACAAGAAAGAATACACCTGTTTAAAGTGTAATCAAAGTTTCTCAACACATAACGCCTTACAGATTCACAGATCGCACGCCCATGTGTCTACATGCAATATTTGCTTCCAAACTTTTTCATCGCACAGCAAGAGAttgaaacatttgaaaaaaGACCATATCATTGAGGGTAGCGAATGTGGATTCTGTCTAAAGACTCTAGCTACAAGACAGGCCTTTTTCCGTCACGCCACGAAATGTAACGCCAAGGGAGAGTTTACATCTCCTAATGAAAGGGTAAtcgttgatgatgatgataaaaaacAATCTATAAAAGTGATCAGGAGTAATATTGCTTGCATTTTGAATATGTCCACTGCTGTACCGTTTAAATATTTCCTAAATCAGTTCAGATGTTTCTATTGCCCCAAAGATTTTTCTGATTGCGATATTCTTAAAGAGCATACGGTAACTGAACACCCGCACTGTGATATTAGGTTAAAATCAATGCGTTTGCGTAACAGATAcgatggtataaaaataaaaattgacacATCCAGTCTATCCTGTAAACTTTGTTTCGAAAGTATTCAAGATTTGGATGCCCTTATAAACCATTTAGTGAAGGAACATAAAGCGACCTACGACAGATCGGTCGAAAATAATCTTCAGCCTTTCAGTCTAGTAAAAGACAGTTTTCCTTGCCCTTTCTGCGACGTAGTGTATAGGTATTTCGGTATGCTATTAAAACATATAAGTACAAGTCATACGGATAATAGAATAATTTGTGTCTACTGCGGAATCCCTTTTAGGACCGAACCGAATTTACGTGCACACGTTTTAAGACGTCATAAAGGCACAAGGTACAAATGCGACAAATGTGACGTAGGTTTTTCAAATAGCAGCGCTTTGCAGAATCATTTAGGCAAAGTGCACGGTAGCAAGATTGTTAAATGTTCGCAATGTCTCGAAAAGTTCACTTCGCAATACTGGATGCAGAGACATAAGATCGCCACCCATGGCTCGGGCCATAAGTGCTCTTACTGTGACAAACTGTTCACTAGGAACTCTTTAATGGTCAACCACGTTAGGAGATTTCATTTGAAAGAGAGAAACGTGGAGTGTTCTATATGTTTCGAGCGATTTTTCGACGCGCAACGGTTAAAAATGCACATGGTCAAACATGTCGGCGAAAGAAATTTCCACTGCGACGTGTGCGGCAAAAAGTTTCTGTGGAAGAGAAACCTTAGAGGGCACATGTCTTCACATAACAGAGTCAATACTCAGCTTCAGACTTAA
- Protein Sequence
- MALVIQNFCREYSDNIPEKPQARSQRSKLTRRSNLGTLFHNTSVIPFKWKNVFMCFYCGKHTSVYEELKKHTKSHGKCTLQEHSFKQLSSVKQDVKIDISELVCNICHSCFVCLDDLIDHLVDDHSLTYDKETFMHMWQFTLSALKCHECDEAFLYYSFFISHVLEKHPLDTYICDHCGDFFNDQKDLDHHKIEQNIVYVLNMSTAIPFRYNKLRFRCFHCYNEFTEFESLKKHTETIHMKGDVKKLGGMLEIRSENAKVNIDVNGLSCKICKESFNVLDVLIDHLVAKHEAKYDKTVASVFNPFKVAEDNISCCACDIEFSGLSVFAHINTVHLNQTVVCEFCGMVLNDEPSLKSHVTIFHSGAFTCSNCYKEFPSDFQLKLHKARIHDENGPSRAFSANYARRRNLQILFNNTSMIPFKWRGKYMCFYCGEDGTDYNNLRKHTKGHGICSKDDRAIKLVKAFDSEVKIDVSDIICEICSEPFPNFDEVVTHLMFKHNLPYNKDVDLMIATYRLVDLKCLICDETFDYFRKLVIHVNNSHPEKCFQCHDCDQQFNKKRDLDSHVRLHHKKEYTCLKCNQSFSTHNALQIHRSHAHVSTCNICFQTFSSHSKRLKHLKKDHIIEGSECGFCLKTLATRQAFFRHATKCNAKGEFTSPNERVIVDDDDKKQSIKVIRSNIACILNMSTAVPFKYFLNQFRCFYCPKDFSDCDILKEHTVTEHPHCDIRLKSMRLRNRYDGIKIKIDTSSLSCKLCFESIQDLDALINHLVKEHKATYDRSVENNLQPFSLVKDSFPCPFCDVVYRYFGMLLKHISTSHTDNRIICVYCGIPFRTEPNLRAHVLRRHKGTRYKCDKCDVGFSNSSALQNHLGKVHGSKIVKCSQCLEKFTSQYWMQRHKIATHGSGHKCSYCDKLFTRNSLMVNHVRRFHLKERNVECSICFERFFDAQRLKMHMVKHVGERNFHCDVCGKKFLWKRNLRGHMSSHNRVNTQLQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01083573;
- 90% Identity
- -
- 80% Identity
- -