Odup022551.1
Basic Information
- Insect
- Ochropacha duplaris
- Gene Symbol
- -
- Assembly
- GCA_951361185.1
- Location
- OX592717.1:2348009-2351644[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0054 0.4 11.8 1.2 3 23 2 22 1 22 0.97 2 24 0.0023 0.17 13.0 0.2 2 21 50 69 49 72 0.89 3 24 0.0034 0.25 12.5 1.4 2 23 93 115 92 115 0.92 4 24 2 1.4e+02 3.8 2.2 1 23 120 142 120 142 0.86 5 24 0.5 36 5.7 5.8 1 23 163 186 163 186 0.96 6 24 0.01 0.74 11.0 0.7 3 23 214 235 212 235 0.94 7 24 0.013 0.96 10.6 0.2 3 23 285 306 283 306 0.94 8 24 9.2 6.7e+02 1.7 0.2 1 8 310 317 310 325 0.80 9 24 0.063 4.6 8.5 1.0 1 23 352 374 352 374 0.98 10 24 0.091 6.7 8.0 0.1 3 23 403 424 401 424 0.89 11 24 0.018 1.3 10.2 0.4 2 23 445 467 444 467 0.94 12 24 0.00047 0.034 15.2 5.0 1 23 472 494 472 495 0.96 13 24 0.019 1.4 10.1 0.9 1 23 499 522 499 522 0.94 14 24 0.039 2.8 9.1 4.4 2 23 525 547 524 547 0.96 15 24 2 1.5e+02 3.7 0.3 2 20 553 571 552 573 0.91 16 24 0.0018 0.13 13.3 3.0 1 23 626 649 626 649 0.96 17 24 1.9 1.4e+02 3.8 0.1 2 23 678 700 677 700 0.89 18 24 0.003 0.22 12.6 0.2 1 23 722 745 722 745 0.97 19 24 0.00027 0.02 15.9 0.0 3 23 752 773 750 773 0.94 20 24 5e-05 0.0036 18.2 0.2 1 23 778 801 778 801 0.95 21 24 0.0067 0.49 11.5 0.7 2 23 807 829 806 829 0.91 22 24 0.0065 0.47 11.6 3.6 1 23 833 856 833 856 0.96 23 24 0.013 0.99 10.6 0.4 2 23 863 884 862 884 0.96 24 24 0.021 1.6 10.0 0.9 1 23 890 912 890 912 0.96
Sequence Information
- Coding Sequence
- ATGTGTTTCTACTGCGGGAAAAACACAAACGTTTACGAAGAATTGAAAACGCACACAAAATCCCACGGAAAGTGCACTTTGAAAGAACATTCCTTTAAACAACTGGCTTCTATAAATCAAGATGTGAAAGTCGATGTATCAGAATTGGTTTGTAATATCTGCGACTCGTGTTTCGTTCGCCTGGACGACTTAATCGATCATTTAGTTGACGACCACGAGTTATTGTACGACAGAGATACATTTATGCACATGCGGCAGTTTACTTTGAGCGCCCTCAAATGTCATGAGTGTGACGAAACTTTTGTATACTATTCGTTCTTCATATCTCACGTTTTGGAGAAGCATCCGTTGGTAATTTTTACATGTGACCATTGCGGTGACGTCTTCTACCTCCAAAAGGAATTTAATTTCCATCGAATAGAGCATAATATCGAATGTGTTCTTAACATGACTACGGCCGTACCGTTCCGGTATTGCAAAAATCGATTCCGCTGTTTTCATTGCTACAGCGACTTCACAAAATTTGAATCGTTGAAGAAACACACGGTGACTACTCATAAGATAATAAAGAAGTATGCAGACATGATGCTGATCAGAAGTGAGAAAGCTTATGTATACATAGATATTAACGGTGTATGCTGCAAGGTTTGCAACGAATCTTTCAAGGATTTTGGTGTTTTAATCGACCATTTAATTTCGAAACACAAAGCGTCGTACGACAGGACTGTTAAAAATGTATTCAATACTTTTATAGTAGCCGAAGATATTACATGCTGTGCTTGTGACATTGAGTTTAGCGGATTGTCGGTTTTCGAACACATTAATACTGTTCATTTGAATTTAAGTGTAATTTGCGAGTTCTGTGGGATGGTTTTGTGTGATAAACCCAGTCTTAAATCGCATGTGCTGATATATCACAGCGGTGCTTTCACCTGCAGTGATTGCAATGAAATCGGGCCCTCAAGATCCTTTAGTGCCAATTACGCCAGGAGGCAAAATCTACAAATATTATTCAACAATACATCTATGATTCCTTTTAAATGGCGCGGGAAATATATGTGCTTTTACTGCGGCGAGGATGTCAATGATTATTACATTCTTAGGAAGCATACGAAAAGTCATGGAAACTGCTCAAAAGACGACCGCGCGATAAAACTAGTCAAAGCATTTGACAGTGAAGTCAAAATCGATGTATCGGATATAATATGCGAGATTTGTAACGAACCATTTCCTAATTTTGACGAGGTTGTCACCCATTTAACGTTTAAACACAACCTCCCTTATAATAAAGATGTAGATTTGATGATAGCTACCTATAGGTTGATCGACCTTAAGTGTCTGATTTGCGATGAAACTTTTGACTATTTCCGTAAATTAGTCATTCATGTCAATAATAGGCATCCAGAGAAATGTTTTCAGTGTCACGATTGCGATCAGCAATTCAATAAGAAGAGAGATTTGGACTCGCACGTTAGACTTCACCATAAGAAACAGTACAGCTGTTTGAAGTGTGCCCAAAGTTTTCCAACACATAACGCCTTACAGATTCATAAATCAAACGCCCATGTGTCCACTTGCAATATTTGCTTCCTAACGTTTTCATCGCACAGCAAGAGGTTGAAACATTTGAAGAAAGACCATATCACTGAAGGCACCGAATGTGGATTCTGCCTTAAAACTCTAGCTACAAGACAGGCGTTTTTCCGTCACGCTTCGAAATGTAACGCTAAGGGAGAATTTACATCTCCCAATGAAAGGGTAATCGTTGATGATGTTGACGATGATAAGAAACAGTCTATAAAAGTGATTAGGAGTAATATCGCGTGCGTTCTAAACATGTCCACTGCTGTaccatttaaatatttcctaAATAGATTCAGATGTTTCTATTGCCCAAAAGACTTCTCAGATTGCGAATTTCTTAAAGAGCACACAGTAACTGAGCACCCGCACTGTGATATAAAGTTAAAATCAATGCGTTTGCGTAATAGATATGATGGTATCAAGATAAAAATTGACACATCCAGCTTATCCTGTAAACTTTGTTTTGAAAGTATACAAGATTTGGATACCCTCATAAATCATTTAGTGGAGGAACATAAAGCAACTTACGATAAATCTGTCGAAAACAATCTTCAGCCTTTCAGTCTCGTAAAAGACAGCTTTCCTTGTCCTTTCTGCGAGGTAGTGTATAGGTATTTCGGTATGCTATTAAAACATATAAGCACAACGCATACTGATAATAGGATCATTTGTGTCTACTGCGGAATCCCTTTTAGGACCGAACCGAATTTACGTGCACACGTTTTAAGACGCCATAAAGGCACTCGGTACAAATGCGACAAATGTGACGTAGGTTTTTCAAATAGTAATGCTTTGCAGAATCATTTGGGCAAAGTGCATGGTAGCAAGATCGTCAAATGTTCGCAATGTGTCGAAAAGTTCACCTCTCAATACTGGATGCAGAGACATAAGATCGCCACTCACGGCTCGGGCCATAAGTGCTCTTACTGTGACAAATTGTTCACTAGGAACTCTATAATGGTTAACCACGTTAGGAGATTTCATTTGAAAGAGAAAAATGTGGAGTGTTCTATATGTTTCGAACGATTTTTCGACGCGCAACGGTTAAAAATGCACATGGTCAAACATGTCGGTGAAAGAAACTTCAATTGCGACGTTTGCGGGAAAAAGTTTCTGTGGAAGAGAAACCTTAGAGGGCACATGACTTCGCATAACAGAGCCAATGCTCAGCTTCCGACTTAA
- Protein Sequence
- MCFYCGKNTNVYEELKTHTKSHGKCTLKEHSFKQLASINQDVKVDVSELVCNICDSCFVRLDDLIDHLVDDHELLYDRDTFMHMRQFTLSALKCHECDETFVYYSFFISHVLEKHPLVIFTCDHCGDVFYLQKEFNFHRIEHNIECVLNMTTAVPFRYCKNRFRCFHCYSDFTKFESLKKHTVTTHKIIKKYADMMLIRSEKAYVYIDINGVCCKVCNESFKDFGVLIDHLISKHKASYDRTVKNVFNTFIVAEDITCCACDIEFSGLSVFEHINTVHLNLSVICEFCGMVLCDKPSLKSHVLIYHSGAFTCSDCNEIGPSRSFSANYARRQNLQILFNNTSMIPFKWRGKYMCFYCGEDVNDYYILRKHTKSHGNCSKDDRAIKLVKAFDSEVKIDVSDIICEICNEPFPNFDEVVTHLTFKHNLPYNKDVDLMIATYRLIDLKCLICDETFDYFRKLVIHVNNRHPEKCFQCHDCDQQFNKKRDLDSHVRLHHKKQYSCLKCAQSFPTHNALQIHKSNAHVSTCNICFLTFSSHSKRLKHLKKDHITEGTECGFCLKTLATRQAFFRHASKCNAKGEFTSPNERVIVDDVDDDKKQSIKVIRSNIACVLNMSTAVPFKYFLNRFRCFYCPKDFSDCEFLKEHTVTEHPHCDIKLKSMRLRNRYDGIKIKIDTSSLSCKLCFESIQDLDTLINHLVEEHKATYDKSVENNLQPFSLVKDSFPCPFCEVVYRYFGMLLKHISTTHTDNRIICVYCGIPFRTEPNLRAHVLRRHKGTRYKCDKCDVGFSNSNALQNHLGKVHGSKIVKCSQCVEKFTSQYWMQRHKIATHGSGHKCSYCDKLFTRNSIMVNHVRRFHLKEKNVECSICFERFFDAQRLKMHMVKHVGERNFNCDVCGKKFLWKRNLRGHMTSHNRANAQLPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01417050;
- 90% Identity
- -
- 80% Identity
- -