Basic Information

Insect: Tetheella fluctuosa
Gene Symbol: -
Assembly: GCA_951216915.1
Location: OX578230.1:8622954-8626646[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.25 19 6.6 0.2 3 23 145 165 143 165 0.96

2 13 0.00019 0.014 16.5 1.0 2 23 173 194 172 194 0.97

3 13 0.025 1.9 9.8 5.9 1 23 199 221 199 221 0.96

4 13 0.00097 0.075 14.2 1.2 1 23 246 268 246 268 0.99

5 13 4.4e-05 0.0034 18.4 2.7 2 23 276 297 275 297 0.95

6 13 2e-06 0.00015 22.7 1.0 1 23 303 325 303 325 0.99

7 13 1.7e-06 0.00013 22.9 1.5 1 23 331 353 331 353 0.97

8 13 3.2e-06 0.00024 22.0 2.8 3 23 362 382 360 382 0.96

9 13 2.9e-06 0.00022 22.2 0.1 1 23 388 410 388 410 0.98

10 13 5.7e-05 0.0044 18.1 1.6 1 23 416 438 416 438 0.98

11 13 2e-05 0.0015 19.5 8.3 1 23 444 466 444 466 0.98

12 13 4e-06 0.00031 21.7 0.5 1 23 472 494 472 494 0.99

13 13 0.00045 0.035 15.3 2.7 1 23 500 522 500 522 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.25	19	6.6	0.2	3	23	145	165	143	165	0.96
2	13	0.00019	0.014	16.5	1.0	2	23	173	194	172	194	0.97
3	13	0.025	1.9	9.8	5.9	1	23	199	221	199	221	0.96
4	13	0.00097	0.075	14.2	1.2	1	23	246	268	246	268	0.99
5	13	4.4e-05	0.0034	18.4	2.7	2	23	276	297	275	297	0.95
6	13	2e-06	0.00015	22.7	1.0	1	23	303	325	303	325	0.99
7	13	1.7e-06	0.00013	22.9	1.5	1	23	331	353	331	353	0.97
8	13	3.2e-06	0.00024	22.0	2.8	3	23	362	382	360	382	0.96
9	13	2.9e-06	0.00022	22.2	0.1	1	23	388	410	388	410	0.98
10	13	5.7e-05	0.0044	18.1	1.6	1	23	416	438	416	438	0.98
11	13	2e-05	0.0015	19.5	8.3	1	23	444	466	444	466	0.98
12	13	4e-06	0.00031	21.7	0.5	1	23	472	494	472	494	0.99
13	13	0.00045	0.035	15.3	2.7	1	23	500	522	500	522	0.97

Sequence Information

Coding Sequence: atggcTACTGTCACTCACTTGAAAAACTTCGATGGTTGTTGTAGAACTTGTTTGAACGATGCatcaaacaaaatgtatgatattttttctgaaaaatataattccataaATGTTGCAACTATGTTATCGTCTTGTACTTCTATAAAGgtGTATACAGAAGACAAATTACCTAAAAAGTTGTGCAGTAGCTGCTACAACTGCCTCATCAGTTTTTATGACTTCCGGAAACTTGCTGAAAAAATTGACACATCGCTACAAAGTTATTCAGTAAGAAAACAATATGAATTTGATATACCAAATACCGATAAGAGTATAGCAGTTGAAGTCAGTTTAGAAAATGATAACTCTGATGTCAGTGTCAACTATGATGTtttagaaaacaataaaaaaatagaatttaagcTTGAAGAAATAAAAACTGAAGAAATCTTTTGTAATGAATGCTTTGATTCCTTTGAAAATGAAATTCAGTTGATTGAACATTCTAAAATCCATAAAGACAGCTGTAGTGAGCTAAAATGTGATATTTGTTATAAAGTATTTGAAATAGAGTCAAAACTTAAACGGCATAGACTTAGGCATACAAGTTCATTATTTGCATGCAATTTATGTAATGAAACTTTCAAACATCATTTCAAATATGTCAAACATTTAGTTAAGCATGGCCAAGATGGTAAAAATAcactaatgaaaataaacaaaaatgaataCAATAGTAATGCTTCAAACCAAAACTTTAAATGTGAGGTATGTTATGCTAACTTTAAAAACGTGAATTCTCTTTCGGCCCACAAGAGAAAACATGCTAAGAAAGGCAGAATACTATCATGTTCTGTATGCAATAAGATATTTAAGAAAACAAGCCATTTAAAAAGACATGAACTGATTCATGATATCAATAGGCCATTTAAATGTCCGAAATGTGACAAGTCATTCACAACAGAAAGTATATTAACAGAACATATCAATAAACATAATGGAATTAAGCCACATATATGTCCTATATGCTCAAAGACATTCTCATTTTTATCAACGTTGACtaatcatataaaaatacatacgaAAGAAGAAAAGCGGCACTTGTGTCCAACTTGCGGGAAAAGGTTTGATTCAAGTACAAATCTCAAGCAGCATTTGAATAGGCATATAGGACTGAAGAGGTTTCCTTGTGCCATGTGTCCGAAGAAGTTTGTTAGTAAAGGTGAACTCAAATCTCACATAATAACGCACACAGGTGAGCGCAAGTACAGTTGTGAACGTTGTGGATCTAAATTCATTAACCGCACCTCACTTAGTAAACATATGCTGAGACATTTAGGACTGAAGCCACACCAATGTGACGTTTGCCATATGAAGTTCACGAGTAAAGACCACCTGAAGCGTCATTACCGTATACACACGGGCGAACGTCCTTACCGTTGCGATATATGCGAGCAGGCGTTTATACAGAGCAATGATTTGGAAAAGCATAAACGATCGCATTTAGGTGATAATTTATATGAATGTGACCAGTGCTCTCAGCGTTTCAAACTGAAAACTGAATTACGACATCATATATCCGAACACTTTATAACATCTCGACTGCAAAGTTTAAATGTAACAAACGATTGTATAGAAATTAATGGTAATACCATGACAAGTGATGTCCTGAAGGGTGATAATTTACAAGCTAAAATGATTGCAATTGAAAGTGTTGGTGATGAAACGTGA
Protein Sequence: MATVTHLKNFDGCCRTCLNDASNKMYDIFSEKYNSINVATMLSSCTSIKVYTEDKLPKKLCSSCYNCLISFYDFRKLAEKIDTSLQSYSVRKQYEFDIPNTDKSIAVEVSLENDNSDVSVNYDVLENNKKIEFKLEEIKTEEIFCNECFDSFENEIQLIEHSKIHKDSCSELKCDICYKVFEIESKLKRHRLRHTSSLFACNLCNETFKHHFKYVKHLVKHGQDGKNTLMKINKNEYNSNASNQNFKCEVCYANFKNVNSLSAHKRKHAKKGRILSCSVCNKIFKKTSHLKRHELIHDINRPFKCPKCDKSFTTESILTEHINKHNGIKPHICPICSKTFSFLSTLTNHIKIHTKEEKRHLCPTCGKRFDSSTNLKQHLNRHIGLKRFPCAMCPKKFVSKGELKSHIITHTGERKYSCERCGSKFINRTSLSKHMLRHLGLKPHQCDVCHMKFTSKDHLKRHYRIHTGERPYRCDICEQAFIQSNDLEKHKRSHLGDNLYECDQCSQRFKLKTELRHHISEHFITSRLQSLNVTNDCIEINGNTMTSDVLKGDNLQAKMIAIESVGDET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01416092;
90% Identity: -
80% Identity: -