Tocu014117.1
Basic Information
- Insect
- Tethea ocularis
- Gene Symbol
- -
- Assembly
- GCA_963555595.1
- Location
- OY741972.1:8117431-8121432[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0094 0.6 11.2 0.2 3 23 145 165 143 165 0.96 2 13 3e-05 0.0019 19.0 1.0 2 23 173 194 172 194 0.97 3 13 0.002 0.13 13.2 4.5 1 23 200 222 200 222 0.97 4 13 0.0012 0.076 14.0 1.3 1 23 245 267 245 267 0.99 5 13 0.00014 0.0087 16.9 2.7 2 23 275 296 274 296 0.95 6 13 9.6e-08 6.2e-06 26.9 0.9 1 23 302 324 302 324 0.99 7 13 1.2e-06 7.8e-05 23.4 2.4 1 23 330 352 330 352 0.97 8 13 1.8e-06 0.00012 22.8 2.7 3 23 361 381 359 381 0.96 9 13 1.8e-05 0.0012 19.7 0.3 1 23 387 409 387 409 0.97 10 13 0.00036 0.023 15.6 1.6 1 23 415 437 415 437 0.98 11 13 0.00038 0.024 15.5 5.3 1 23 443 465 443 465 0.98 12 13 5.1e-06 0.00033 21.4 1.1 1 23 471 493 471 493 0.99 13 13 0.0002 0.013 16.4 1.1 1 23 499 521 499 521 0.97
Sequence Information
- Coding Sequence
- ATGGCTACTATAACTCATTTGAAAAACTTCGATAGTTGCTGTAGAACTTGTTTGAATGATGCATCGAACaaaatgtatgatatttttaCTGAAAGATCAAATTCAATGAATGTTGCCgatatgttatcaacatgtacATCTATAAAgGTGTATACAGAAGACCGTTTACCTAAAAAGTTGTGCAGTAGCTGCTACAACTGCCTCATCAGTTTTTATGATTTCCGGAAACATGCTGAAAAAATAGATGCAAAGCTACAAAGTTGTTCTATAAAAAGACAATACGAATATGATGAAACAAATTCAGTGAAGAGTATAGCAATAGAAGtcaatttagaaaataataacacaGATGTCAGTGTTGATTATGATGTTTTAGAAAACAATCAACAGTTAAAACTAAAGCTTGAAAAAATAGAAACTGAagaattattttgtaatgtatGCTTTGAGTCTTTTGAAAATGAAATTCAGTTGATTGAACATTCCAAAGTCCATACAGATAGCTGTAGTAAGCTAAAATGTGATATTTGCCTTAAAGAATTTGAACAGCAGTCAAAACTAGAACGGCATAGACTTAGGCATAAGAcaagtaaattatttacatgCAATTTATGTGATGAAACATTCAAACAGCATTTCAAGTACGTCAAACATTTAGTTAAACATGGCCAAGACGGTAAAAATACcttaatgaaaataaaccataatTTTCACAACAGTTCGattcaaaatttcaaatgtGATCTGTGTTCTGCTAACTTTAAATCTATTAATTCTCTTTCTGCACACAAGAGAAAACATGCTAAGAAAGGCAGAATACTATCATGTTctacatgtaataaaatatttaaaaaaataagccatTTGAAAAGACATGAACTGATTCATGATATCAATCGGCCATTTAAATGTCCAACATGTGATAAATCGTTTACAACGGAGAGTATGTTAATGGAacatattaataaacataatggaATCAAGCCTCATATGTGTCCTATATGCTCGAAGACATTCTCATATTTGTCAACATTGACCAATCATATAAAATCACATACTAAAGAAGAAAAGCGTCACTTGTGTCCAACTTGTGGGAAACAATTTGATTCCAGCACAAATCTCAAGCAGCATATGAATAGGCATATTGGCCTGAAAAGATTTGCTTGTGCTATGTGTCCGAAAAAGTTCATTAGCAAAGGTGAACTAAAAACCCATACTATAACTCACACAGGTGAGCGCAAGTACAGTTGCGAACGATGCGGATCAAAGTTCATTAACAGTACATCACTTAGTAAACACACACTGAGACATTTAGGATTGAAGCCGCACCAATGTGATGCTTGCCATATGAAGTTCGTGAGTAAAGATAAACTGAAGCGTCATTACCGCATACACACGGGGGAACGTCCATACCGCTGCGACTTATGCGAGCAGGCGTTCACGCAGAGCTACGACTTAGTCAAGCATAAGCGCTCGCATTTAGGCGATAACTTATATGAATGTGACCAGTGCTCTCAACGTTTCCGATTGAAAACTGAACTCCGACAACACATATCTGAACACTTTATAACCACTCGACTGCAAAGTTTGAACGTAAAACAAGGTTGTGTAGAGATTAATAGTAATACCATGAGTAGTAATGACTTGAAAGTTGCTGGTAATGATTTACACACTAAAACGGCATTTGAAAGTGTTGGTAATGAGACTTGA
- Protein Sequence
- MATITHLKNFDSCCRTCLNDASNKMYDIFTERSNSMNVADMLSTCTSIKVYTEDRLPKKLCSSCYNCLISFYDFRKHAEKIDAKLQSCSIKRQYEYDETNSVKSIAIEVNLENNNTDVSVDYDVLENNQQLKLKLEKIETEELFCNVCFESFENEIQLIEHSKVHTDSCSKLKCDICLKEFEQQSKLERHRLRHKTSKLFTCNLCDETFKQHFKYVKHLVKHGQDGKNTLMKINHNFHNSSIQNFKCDLCSANFKSINSLSAHKRKHAKKGRILSCSTCNKIFKKISHLKRHELIHDINRPFKCPTCDKSFTTESMLMEHINKHNGIKPHMCPICSKTFSYLSTLTNHIKSHTKEEKRHLCPTCGKQFDSSTNLKQHMNRHIGLKRFACAMCPKKFISKGELKTHTITHTGERKYSCERCGSKFINSTSLSKHTLRHLGLKPHQCDACHMKFVSKDKLKRHYRIHTGERPYRCDLCEQAFTQSYDLVKHKRSHLGDNLYECDQCSQRFRLKTELRQHISEHFITTRLQSLNVKQGCVEINSNTMSSNDLKVAGNDLHTKTAFESVGNET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01417043; iTF_01252038;
- 90% Identity
- -
- 80% Identity
- -