Tflu006678.3
Basic Information
- Insect
- Tetheella fluctuosa
- Gene Symbol
- Rfx2
- Assembly
- GCA_951216915.1
- Location
- OX578219.1:1886506-1905512[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.041 3e+02 2.8 0.1 3 19 229 245 227 254 0.85 2 3 3.6e-37 2.6e-33 115.1 0.0 3 78 270 345 268 346 0.97 3 3 2.7 2e+04 -3.1 0.0 24 33 695 704 683 710 0.71
Sequence Information
- Coding Sequence
- atgtcTGAAATGGCATTTGAGAATGTGTTCTATTTAGAAAATTTTGAGTGCGCCGGTGACGAAGTGTTGGTAGAGTCGTCGCCGCCCGCCTCACCCGAAATGGCGGCGCGACTCGCAGCGCCTTCGCAGAGTGCGGTCGCGGGCGGCGACACGTCGCCAGACGCGGTCCGTGAGCTGATCATCCCAGAGATACCGGACTCTATACATCTGCAGCATGCCATACAACAGGTTTCCAGCACAGTGGTGGAAGTGAATGGTGGTAGTTCAGGAGATTCCAGCCCCTCCACGGAGGCGCAACATACCTACATCACTGTTGCCATGCAGGGCGCATGGAGTGAGAGCATCGCCACTGAACAAGTCAAATCCGAGGAACCGAGTGACCAAGAAAGTGAGGGCAGTAATGGAGTCAATTACCACGTTCAATACGTCACCGAACCGCAGGAGATATACGCTCAGGGTCATCAGACgcatatGGACCCCCTGCGCTCGTACCCGGTGTACGGCGTGACCACGGTGCCGGTGGGCGCGGACGGGAGCGCGGAGGGAGCCTCGCCCGACGCCGGCTGGGGCGGGGCCACCGCCGAGTACACCACCTATGGAGTTGTGGTGGCCGGCGACGAGGCGGAGACGGCGTCGTCGCCGGCGACCCCGGGCGCCGCGCCGGCCGCGCCGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTCGACAACTACGAGACCGCCGAGGGTACGTGCGCGTGGTACGGTACTTACTGTAGGTGGCCGGCGACCCCGGGCGCCGCGCCGGCCGCGCCGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTCGACAACTACGAGACCGCCGAGGGTGTATCCCTCCCCCGATCAACTCTATACGCGCACTATCTCCGGCACTGCACGTCCCACCGGCTGGACCCAGTGAACGCGGCTTCGTTCGGCAAGCTGATCCGGTCAGTGTTCATCGGACTGAGGACGCGACGTCTGGGCACACGTGGGAATTCTAAGTACCACTACTATGGGATCAGAGCCAAGGGAAACGTCAATAACTCCACAAGCCAAGAGGACGATAAAACTGATGTTGCCGATCAACAGGAGGAGCAGGCTAGTTCTCCGTCTCGCTCGTGCTCACCGACGCCGGGCGGGGCGGGTGGGgtgggcggggcgggcggggcggccgGCGCGGGGGCGGTGGTCGCGGGGGTGGCGCACCGACAGTATCTAGGGTCGGTGATCGCGCCCGACCCCCCAGCGCTGGTGGTGCTTGACCTACCTGATGAAATCCCGCCCACTGCGCTCGTTGCTCTCAATAATCATCATCGCCAACACGGCGTAGAATTCCTGGAAGCCATAGCAGCGTTGGACATAACAGCAGTAGAGCGTTCTCGTCGCTCGTTCTGGCGTCGACCGCCCCCGGAGCTGTGTCGGCGCATTCTGTTTAAGTTGGCGGCAAGGAAGGACGTGGCTCAGTGGCTCAAGACGGCCGAGTTAGAGCTGTACCAACGAGCTGTTGAGTTGCTGCTGCCCGACGTGCTCAGGCCTATACCGCCGCAGTTGACTCAGGCGATCCGCAACTTCGCGAAGAGTCTGGAGGGTGCGCTGGgcgcgggcggggcgggcgcgccggcggcggggcggcgcgcgcaggcggcggcggcgggcgcgctgGCGGCCGCGCTGCGCCGCTACACCTCGCTCAACCACCTGGCGCAGGCCGCGCGCGCCGTGCTCACCAACCACCACCAGATACACCAGATGCTGTCGGACCTGAACCGCGTGGACTTCCGCGTGGTCCGCGAGCAGGCGGCGTGGGCGTGCGCCTGCTCCACCAACGACACCGCGCACCGGCTGGAGGCCGACTTCAAGGCCACGCTGGGGCGCGGCGCGTCGCTGGAGCAGTGGGCGGCGTGGCTGGAGACGTGCGTGTCGTCGGCGCTGGCGGCGCACGCGCACCACCCGCGCGGCGACTACACCGCGCGCGCGCGCCGGCTGCTGCTCGACTGGTCCTTCTACTCCTCGCTCGTCATCAGGGAACTCACGCTCAGGTCGGCGGCGTCGTTCGGGTCGTTCCACCTGATCCGGCTGCTGTACGACGAGTACGTGTCGTACCTGATCGAGCGGCAGGTCGCGCTGCACACCCGCCAGCCGCCCATCGCCGTCATGCATGTGCACGCGCACCACgagGACGAAGAAGATGTCCCCGAGGAGCCCGAACCTGAGCACGAAGAGGAAGATGAACAGGATCACGAACAGGAGTGGGAGTGGGACGATGATGACGAAGAGGACGACGAGCCTATAGAGTGCAAGAAACCCAAGCTGGCGGAATAA
- Protein Sequence
- MSEMAFENVFYLENFECAGDEVLVESSPPASPEMAARLAAPSQSAVAGGDTSPDAVRELIIPEIPDSIHLQHAIQQVSSTVVEVNGGSSGDSSPSTEAQHTYITVAMQGAWSESIATEQVKSEEPSDQESEGSNGVNYHVQYVTEPQEIYAQGHQTHMDPLRSYPVYGVTTVPVGADGSAEGASPDAGWGGATAEYTTYGVVVAGDEAETASSPATPGAAPAAPRMPPATVQWLLDNYETAEGTCAWYGTYCRWPATPGAAPAAPRMPPATVQWLLDNYETAEGVSLPRSTLYAHYLRHCTSHRLDPVNAASFGKLIRSVFIGLRTRRLGTRGNSKYHYYGIRAKGNVNNSTSQEDDKTDVADQQEEQASSPSRSCSPTPGGAGGVGGAGGAAGAGAVVAGVAHRQYLGSVIAPDPPALVVLDLPDEIPPTALVALNNHHRQHGVEFLEAIAALDITAVERSRRSFWRRPPPELCRRILFKLAARKDVAQWLKTAELELYQRAVELLLPDVLRPIPPQLTQAIRNFAKSLEGALGAGGAGAPAAGRRAQAAAAGALAAALRRYTSLNHLAQAARAVLTNHHQIHQMLSDLNRVDFRVVREQAAWACACSTNDTAHRLEADFKATLGRGASLEQWAAWLETCVSSALAAHAHHPRGDYTARARRLLLDWSFYSSLVIRELTLRSAASFGSFHLIRLLYDEYVSYLIERQVALHTRQPPIAVMHVHAHHEDEEDVPEEPEPEHEEEDEQDHEQEWEWDDDDEEDDEPIECKKPKLAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00006818; iTF_01415557;
- 90% Identity
- -
- 80% Identity
- -