Tocu011369.1
Basic Information
- Insect
- Tethea ocularis
- Gene Symbol
- ZIPIC
- Assembly
- GCA_963555595.1
- Location
- OY741968.1:10076797-10084127[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0063 0.4 11.7 1.0 1 23 268 290 268 290 0.99 2 10 0.24 15 6.7 7.6 1 23 297 320 297 320 0.93 3 10 0.0003 0.019 15.9 0.2 1 23 351 374 351 374 0.97 4 10 2.6 1.7e+02 3.5 1.2 2 17 379 394 378 401 0.78 5 10 0.018 1.2 10.3 0.1 2 19 412 429 412 431 0.96 6 10 3.2e-05 0.002 18.9 0.8 3 23 442 463 442 463 0.97 7 10 2.4e-05 0.0016 19.3 0.5 3 23 478 499 477 499 0.96 8 10 5.2e-05 0.0034 18.2 4.3 1 23 518 540 518 540 0.98 9 10 0.025 1.6 9.8 0.1 1 23 546 568 546 568 0.95 10 10 5.1e-05 0.0033 18.3 3.4 1 21 578 598 578 599 0.95
Sequence Information
- Coding Sequence
- ATGTATGATGTAAATACAAATTCTACAGAGTTCCCGACCGACGAAGCCTTCTTCCAATTAATGCAAATACCTATTTCGAATGATAAAGAATATGTTTGCTTCTTATGTGTAAGGCTATTACAAAAGTTTCAAGAGTTCAAGTCAAAATGTCAGAGGGCACATGATATTCTATCAAGATTAAAGATTGAAAATGTCGAGcttacacataaaattataaaaaacattgacCGTAAATATAACAAACTTACACACAATTTCACTTTCACTTCACTAACAGATAGTTATGATATTGGAAATGCAAGAACTTCTAACAATGATAACAATATTGATATAACTTATGTTAAAACGGAAACAGAGTACAATTACAATACAGATTATATTAAAGACGAAGAACAGATATTAAATGGTCATAATGGTAATGTTCTTGATGATGAATCAAATGAAGTTGATGATAATTTTTCTGCAGATGAAAATATTGTTGATAATGTTGGAATAACAAGCaagaaaagaaaaattttacacaaagaacctaaaactaaaaaaagaaaaatcaaaagcaatacaaaaaatgtaaagaaaaaactggatgatgatgaaaaatcaTTAAGTGATGATGAACCCTTGTCTAATAAAGTTACTAAGAAAGTggataaagtaaataaaacaagtaAAAGGAATTACAATAAGAATTTTAATGCAAGCTTCTTTGAAGATTATGCTACAGTTGTGTTTTTGACAGCCGAAGAAGCAAAAAATGAAGTCCTATTGAGAAAAGAGTCCAGCAATTACAAGAATTCAGAATTTAAGTGCGAGTTGTGCTTTAGAGGATATGAAGCCAAGACAGCTTTTGCTAATCATATGAAGAAACATAGTGtggaatatGGTGAGCACGAGTGTGAACTATGTCATTTACGGTTTCCCCAGCAAGTATTTCTCTGTAAACACCGTCTCGCTTGCCACAAGAGGAAGTTTTACTGCAAAATATGTCCGTATGTTTGCTTCTGCACaCACCAAGCAAAGACCCATGTTAGTCTACATAAAGGAAAGAAATATCCTTGCAAGGATTGTAGTGAAATTTTCAgTATGCCAAACAGCCTAGCAATGCATAGAAGACTGAAACACATGACAGAGTGCGTATGCGAATTGTGTGGAAGTACCTTTGCCACGACACGAGGCCTCTACTTCCATAACATGAAGGTACATAGACAGGATACAAATGATAAACAAGGACCAAAGTGTGACGAGTGTGGCATTCACTTTGCCACCGAAGTAGCTTGGAAACGACATTTCGTTTTATCCTCTAAACACATAGTGAGCAACGGTTGCAAATACTGTGGGGATACATTCTCGAATCCAAACGAGTTGAAAACACACATGAGAGGCTTCCACGCTCGCAAGCATTTCAACAGGAAAGTCAAATTGCCCGTCGCATGTCCCATTTGTAATAAATCATTAACAACACGCAGCGAATACAAGTCCCACATGACGTCGGAGCACCCCTCATCGGAAATGGCGAAGAAAATAGACGCGGAAGATCAGAAAGTGCAGAAGTTTGTGTGTGAAGTCTGCGGGCAGATGTTTAAgCAACAATGCTTCCTGCGGTACCACCAGCGCAAGCATACGGGCGAGCGGCCATTTTGTTGCGGGGCGTGTGGTAAGCGGTTCCAGGTGGCGGGCGCACTGGGTGCGCACGCGCGGCTGCACGCGCACCCGCCCGCCGCGCGACGCACGCACAAGTGCACGCTGTGCCACAGGGACTTCACCTTCAAGAGTGCACTCAATAAACACATGAAGGTTACCCTATTCAATTATTCATTGGGAATATCTGATCCTGTGGTGGGGCGATAA
- Protein Sequence
- MYDVNTNSTEFPTDEAFFQLMQIPISNDKEYVCFLCVRLLQKFQEFKSKCQRAHDILSRLKIENVELTHKIIKNIDRKYNKLTHNFTFTSLTDSYDIGNARTSNNDNNIDITYVKTETEYNYNTDYIKDEEQILNGHNGNVLDDESNEVDDNFSADENIVDNVGITSKKRKILHKEPKTKKRKIKSNTKNVKKKLDDDEKSLSDDEPLSNKVTKKVDKVNKTSKRNYNKNFNASFFEDYATVVFLTAEEAKNEVLLRKESSNYKNSEFKCELCFRGYEAKTAFANHMKKHSVEYGEHECELCHLRFPQQVFLCKHRLACHKRKFYCKICPYVCFCTHQAKTHVSLHKGKKYPCKDCSEIFSMPNSLAMHRRLKHMTECVCELCGSTFATTRGLYFHNMKVHRQDTNDKQGPKCDECGIHFATEVAWKRHFVLSSKHIVSNGCKYCGDTFSNPNELKTHMRGFHARKHFNRKVKLPVACPICNKSLTTRSEYKSHMTSEHPSSEMAKKIDAEDQKVQKFVCEVCGQMFKQQCFLRYHQRKHTGERPFCCGACGKRFQVAGALGAHARLHAHPPAARRTHKCTLCHRDFTFKSALNKHMKVTLFNYSLGISDPVVGR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01083623; iTF_01252119; iTF_00007430; iTF_01417146;
- 90% Identity
- -
- 80% Identity
- -