Tocu022271.1
Basic Information
- Insect
- Tethea ocularis
- Gene Symbol
- -
- Assembly
- GCA_963555595.1
- Location
- OY741986.1:1526676-1529066[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 8.2e-06 0.00053 20.8 4.1 1 23 8 31 8 31 0.95 2 20 0.0039 0.25 12.3 0.3 2 23 37 59 36 59 0.94 3 20 1.2e-05 0.00079 20.2 0.3 2 23 68 90 68 90 0.97 4 20 1.8e-05 0.0012 19.7 1.9 2 23 99 121 98 121 0.94 5 20 1.2e-05 0.00076 20.3 1.2 2 23 129 151 129 151 0.97 6 20 7.2e-06 0.00046 20.9 2.3 2 23 160 182 159 182 0.96 7 20 2e-06 0.00013 22.7 1.6 1 23 188 211 188 211 0.98 8 20 0.043 2.8 9.1 0.6 1 23 219 242 219 242 0.96 9 20 0.00052 0.034 15.1 0.4 2 23 260 282 259 282 0.94 10 20 0.00032 0.021 15.8 0.5 1 23 308 331 308 331 0.98 11 20 0.0046 0.3 12.1 1.5 2 23 368 390 368 390 0.96 12 20 0.0011 0.072 14.1 5.7 1 23 414 437 414 437 0.97 13 20 1e-05 0.00067 20.5 0.5 2 23 444 466 443 466 0.96 14 20 0.00013 0.0081 17.0 2.2 2 23 473 495 472 495 0.94 15 20 0.0085 0.55 11.3 2.2 1 23 501 524 501 524 0.97 16 20 0.1 6.5 7.9 5.0 2 23 532 554 532 554 0.95 17 20 0.00031 0.02 15.8 0.3 1 23 561 584 561 584 0.97 18 20 0.011 0.69 11.0 2.3 1 20 591 610 591 614 0.90 19 20 0.02 1.3 10.1 2.7 3 23 629 650 628 650 0.91 20 20 9.6 6.2e+02 1.7 1.3 1 10 700 709 700 713 0.90
Sequence Information
- Coding Sequence
- ATGTATTCAAGTCAGTTAGATTTTATTTGTGATTACTGCAGTAGAACTTTTACcagaaaatataatttgcaaACTCATATAGAAAATTGTCATATCAATTCTTCTTGTTATTGCGAGATTTGTGAGCAGAAATTCGGCAGTCCAGCTGGATTGCAACTCCATCTCACAAGGGGACATAACAGATATGGCCAACCATTTCCAGAATGTGATTTATGTGGACGCGTATTTACTAGAAAACAGAATATTATGTCTCATATGATTACAGTTCATTTACAAGGGTTAGGTCCGCAAATTAGGTGCAGGCTATGTAACAAAACTTTTACAACAGAGAGGAACTTGAAAAGGCATGTGAATCAACTGCACAACCCAGATGTTGAATACCCAACTTGTGATGAATGTAACAAAGTCTTTAAAGGAAAGCATTCGTTGATAGTACATATTCAGACGATGCATACGTCGTCGGTACGTGGAATTATCAGGTGTCATTTATGTGAGAAAGTGTATACGAATAATCGTAACTTAAAACGTCATATTGAGATGTTCCATGGAGAGAAAGGTGAATTTAGATGTGATATATGCCCGAAAGTGTACACTTCAAATCAGAGTCTGCGAAGACATTCTAGGACGCGACATAATACCGACAAccaagatcaatacaagtgtgATTTTTGCtcgaaaattatttttggaaaaGATAATTTGGATAGTCATATACAACTGTATCACAGACAAGACAGTCCAAATGACGATGATTTTGATAACAAAGACAGTGATATCACCTGCGAATCTTGCGGGAGGAGTTTCGAAGAGGAAACACAATTGCGTCAGCATATCAAATTTGAACAttcatttaaaacattttacaagTATTGTAGGAAATCATTGATAAAGCAGTATGGTGGCGATGGACGCAGACAGTTTTACAATTGCGAGTTTTGTAATATCGCTTCTACCACTGTTTATGAGTTAAAAGACCATATGAGAACAAATCACGATATTGAATATAATCTTTCTACATGCAATGTTTGCTTCAACAAATTCTATAGCAAAGAAATAATGATTGAACATAAGAAAATCTGTATACCACCTGCTAATGTGAACTCTTGCAGCCATTGCGATAAATTGTTTACCGATATATCGAGTTTAGAGTTTCATATAAGAATTTTTCATCCACAAGCACAAATTGCTGATTCTAATATATCATCGACAAATTTTGATGACACTCTTGACCCTGGGGCTTATAAATGCGTTCATTGCGACCGAATTTATTATAGCGAGAGATCTCTAAAACATCATATGAAATTAAAGCATACAACAGACGAGGCGGTAGAGTGTGAATATTGTGGAAAAATTTGCAGCAACAAATATTACTTAGCATCTCATATTAAAATCGTTCATAATAACGATACATGGTCCAAATGTGATTATTGTGAAAAGCAGTTTAAGTCTAAGAGAAATATACGAAGACACATCGAGTATACGCATTTGGGAATGCAAAGGTACAAGTGTATCGAATGCGAAACTCTTTTTAAAGAGAAAAGAAGCTTACGTAAGCACGTCAGAACAAAGCATCCTAACTCAGCAACGTTTCCACAGTGTCATATTTGCCAGAAAAGATTTGAATCGGCAAAATCTTGTAAAATTCACCTGAAATTGCTTCATTCTTTTAATATGAATACTCATCCATGCGATCTCTGTTCAGTTTCCTTCAGCTCCAATGAAGCTTTGGTGATACATTTGCAGACAAAACATTTGGCTGAGGATGAAATTTACAAATGCGAAGAATGCAACCTTGTATTCAAAGGACAGGAGAAATTTGAACAGCATAATGATCTGTGCCATGTGAATTTAGTACCAAATGTAAAGCAAAAGGTGCTCCCGAGATGTATTATTTGCATGAAAGATTTTAGCACaagaaaaactttaaaaagaCACATTAAGAAGTTCCATTGTGAATTTGATGTTGATGATCTAGCCACTTTTGGGTCTAGGCGTCGAGTTTTTACTATCGATTGCGAAGACTGCATTAAAAACTTCAACGATGATTTCCATTTTAATATCTATCAGAAACTCAAACATTTGCGAGACACTGTCATTTTTAAATGCGAAACATGTAACTGCTCCTATAACGCTTTGGAATATGCTATACAAAGATATAAGCTTGCTAATTTCGATGGCTTCAAAAGTAAAATGATACTAAGTGAACTATGTACAACAGAAATGAGTGATGAGGAAGGTTACATAGCTTCTGAATTTGGGTCCTTACATGAGATGATGGAACCAGAAAGTACAACAAGTGATATAAAGCTGGAGGCTCCAGGAGATGAAGCTTTATGTACGTCTTCAATTAATATAGGGGTTGATATTAAAAACGAACCTATGTCTCCATAA
- Protein Sequence
- MYSSQLDFICDYCSRTFTRKYNLQTHIENCHINSSCYCEICEQKFGSPAGLQLHLTRGHNRYGQPFPECDLCGRVFTRKQNIMSHMITVHLQGLGPQIRCRLCNKTFTTERNLKRHVNQLHNPDVEYPTCDECNKVFKGKHSLIVHIQTMHTSSVRGIIRCHLCEKVYTNNRNLKRHIEMFHGEKGEFRCDICPKVYTSNQSLRRHSRTRHNTDNQDQYKCDFCSKIIFGKDNLDSHIQLYHRQDSPNDDDFDNKDSDITCESCGRSFEEETQLRQHIKFEHSFKTFYKYCRKSLIKQYGGDGRRQFYNCEFCNIASTTVYELKDHMRTNHDIEYNLSTCNVCFNKFYSKEIMIEHKKICIPPANVNSCSHCDKLFTDISSLEFHIRIFHPQAQIADSNISSTNFDDTLDPGAYKCVHCDRIYYSERSLKHHMKLKHTTDEAVECEYCGKICSNKYYLASHIKIVHNNDTWSKCDYCEKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSATFPQCHICQKRFESAKSCKIHLKLLHSFNMNTHPCDLCSVSFSSNEALVIHLQTKHLAEDEIYKCEECNLVFKGQEKFEQHNDLCHVNLVPNVKQKVLPRCIICMKDFSTRKTLKRHIKKFHCEFDVDDLATFGSRRRVFTIDCEDCIKNFNDDFHFNIYQKLKHLRDTVIFKCETCNCSYNALEYAIQRYKLANFDGFKSKMILSELCTTEMSDEEGYIASEFGSLHEMMEPESTTSDIKLEAPGDEALCTSSINIGVDIKNEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01417073;
- 90% Identity
- iTF_01083556;
- 80% Identity
- iTF_01416079;