Tocu021313.1
Basic Information
- Insect
- Tethea ocularis
- Gene Symbol
- -
- Assembly
- GCA_963555595.1
- Location
- OY741984.1:5804790-5812328[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-05 0.0069 16.6 0.0 7 35 46 73 42 78 0.88 2 2 0.0049 2.9 8.2 0.0 5 34 228 256 224 267 0.81
Sequence Information
- Coding Sequence
- ATGGATCATGGGATACCTTTGAACATTCACGCTAGGCCGCGCATCGTCGGCCGGCGGCCTAACGCCATTGTGAATATAGAAACGGACGTTTTCCAAGAGAAATCTTACAAGCAGTATTCGTCGCAGCATTTGCGAGATGCCTTAATCGCAGTCAAGAAAGGTTACAGTGTATACGCAGCGTCAAACAAGTATGGTGTGCCAAGGAAAACTTTAAGGAATTGGATGGAAAAGTATGATATTAAGAGTCAGTTTTCTAAGGGCAGGCGTGGAGCGAGAACTACTTTGTTGGACCCTTTGGACTTTATGGCGGAGAATGAGAGGTTCGATGGACAGGTGAAGTTGAAAATCGCGACGGAAACGCAGCACTTCGCGATAGCCAACGTGCAGTGTCAGTACGACAGTCCGTCGGACACTGAGCCGGACGAGCGACCGGTCGCGCGACCGCCGGACGACCACACGTACGACACGAGAGACGAACCACCTGCCTTTATTATACAACATGTTAATGCTACAACTCGGCTCCACAGCGTGTCTCAGGCGCCGTTTGTCGAAGTCCGGCCCAAGATCATGACGATAGAGCCCTCCTACAAGCCAGCTGTCAACGTCATACATGTAGGAGAGCCACAGGTATCGGCCACTCCGGAGTACAGCATGAAGCGCATCCGACGCAGCGAGGGCGTGCTGCGCGCCGCCGCCGACTGCGTCAGCCGCGGACTCACCTTCCAGACCGTCTCCGAACAGTTCAACATACCTATCTCTACTATACGGTTCTTCATGGCGAGAAAAGGAATCTTACCGAGGCGTCGACGCGGTCGTACAACTCAGccAACAAGACCATGCAGTAGTCCGGAGCCCCCGTTTCACATGCAGCATTTCAAATTACCAGATATGGTTGCATTACGATCGGATTGTGACGAAGACCCGCCAAACGACAACTAG
- Protein Sequence
- MDHGIPLNIHARPRIVGRRPNAIVNIETDVFQEKSYKQYSSQHLRDALIAVKKGYSVYAASNKYGVPRKTLRNWMEKYDIKSQFSKGRRGARTTLLDPLDFMAENERFDGQVKLKIATETQHFAIANVQCQYDSPSDTEPDERPVARPPDDHTYDTRDEPPAFIIQHVNATTRLHSVSQAPFVEVRPKIMTIEPSYKPAVNVIHVGEPQVSATPEYSMKRIRRSEGVLRAAADCVSRGLTFQTVSEQFNIPISTIRFFMARKGILPRRRRGRTTQPTRPCSSPEPPFHMQHFKLPDMVALRSDCDEDPPNDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01416722;
- 90% Identity
- iTF_01416722;
- 80% Identity
- -