Tfer042719.1
Basic Information
- Insect
- Tetanocera ferruginea
- Gene Symbol
- bab1
- Assembly
- GCA_958299015.1
- Location
- OY282644.1:110185794-110187539[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-17 5.4e-14 53.0 0.0 1 43 55 98 55 100 0.95 2 2 8.9 1.3e+04 -2.6 0.5 3 13 192 202 190 206 0.80
Sequence Information
- Coding Sequence
- ATGTTGGAGAACTCGCATTCCTGGATGGGCGCTTCGACATCCTCAATAGCAGCAGACAGCTATCAATATCAATTACAGTCCATGTGGCAAAAATGTTGGAATACCAATCAAAATCTTATGCATCATCTGCGTTTTCGAGAGCGTGGTCCACTAAAATCCTGGCGGCCCGAAACTATGGCCGAGGCCATATTTAGCGTACTCAAGGAGGGTCTCTCGCTGTCACAGGCAGCGCGTAAATACGATATACCGTATCCGACATTTGTGCTGTATGCGAATCGTGTACACAACATGCTGGGACCGTCCATTGATGGTGGACCAGATTTGCGTCCTAAGGGCAGAGGACGTCCACAACGAATTCTTCTGGGCATCTGGCCGGATGAACATATCAAGGGTGTTATCAAGACTGTGGTTTTCCGCGATGCAAAAGATATCAAAGATGAAGGACTCACACATTTACCTTATGGCCGACATTCGCCAGTTTTTCCCTTTCAGGAGGGTCATCTGGGTTATGGCGGCGTTGGTGGTCCCTGCCCGAATGGCATGCCTACACCTACGGGTGATCAAATGTCTCAGGAGGCCACCGCAGCAGCTGTAGCAGCTGTGGCGCATAATCTGCGCCAACAAATGCAAATGGCCGCCGTTGTccagcatcaacaacagcacCAACATCAGCATTCGGAATCTGCACCGggtgcaaatattttcaatttgccACCTCATCTGCAGCCACATCTGGCGGCTCCTGTTGGTGGCGGTGCGATAAGTGGCCCAGGCCCGGGTGGCATACCGCTGCCGAAGCCGAATATACAAGCGGCAGCTAATAGCAGCTCGAGTCCAGCTGGTGCTATGCTTAGTGCAAGACATGCACAGTCAGCCTGCAGCAGTGGCATGCCTGGCATGCCTAATCTACCGCCTGGCATGGCCGCTGCCTTGCATGGTGGTCCATCCGCTGCCATGTTGAGtcagcaacagcaacaccaacTGCAGCAGCTGCATCTGCAGCAGCAACATGCAATgcatcaacagcatcaacatcagCTTAAGCAACAATCACCCGCACACATGGCATTCCTTGCATCTGCAGCAGCATCAACATCGGCAGCAGCCGCCTCCTCGTCCGCTGCATTACACCgtcatcagcagcaacaacagcaacagcagcagcagcagcaacaggcTGCAAGTTCGTCCGCGCACCCCTCCACCAGCGTTTCGCCAGCAACTTCGTCCAGCTTACAACAGAAAACCACAACAATATCTTCGTTACATGGTGAACAACGACGTAGCAGTCCACCCAGCATGACGCCGCTTAACTCGCCACTCACCGAGTTGGGCCTGGATGCAGGAGGGCCAGTAGGCATCAGCGGCATGACATATAAGCCGTCACGCGGCTACTCCTCACCACGTGGCGAGCATCTATTTCAGGAGGATATCGCCGAATTGGTAGGCAGTAATATTGGTGCTTCCACCTCAGCCGTATCAGCTGCATCTAATGTTGCCAGTTCGACAACAGTCACAACATCGACGACAGCAGCAACATTAGATGCTGCATCCAGCAGTAGCAGCATAAAAATTGAACCACTAGTTTTGAGCAGCGAATGA
- Protein Sequence
- MLENSHSWMGASTSSIAADSYQYQLQSMWQKCWNTNQNLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKDIKDEGLTHLPYGRHSPVFPFQEGHLGYGGVGGPCPNGMPTPTGDQMSQEATAAAVAAVAHNLRQQMQMAAVVQHQQQHQHQHSESAPGANIFNLPPHLQPHLAAPVGGGAISGPGPGGIPLPKPNIQAAANSSSSPAGAMLSARHAQSACSSGMPGMPNLPPGMAAALHGGPSAAMLSQQQQHQLQQLHLQQQHAMHQQHQHQLKQQSPAHMAFLASAAASTSAAAASSSAALHRHQQQQQQQQQQQQQAASSSAHPSTSVSPATSSSLQQKTTTISSLHGEQRRSSPPSMTPLNSPLTELGLDAGGPVGISGMTYKPSRGYSSPRGEHLFQEDIAELVGSNIGASTSAVSAASNVASSTTVTTSTTAATLDAASSSSSIKIEPLVLSSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01181075;
- 90% Identity
- iTF_01181075;
- 80% Identity
- -