Pcor017200.1
Basic Information
- Insect
- Pherbina coryleti
- Gene Symbol
- bab1_1
- Assembly
- GCA_943735905.1
- Location
- CALSEP010000569.1:319346-321081[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-17 4.7e-14 53.0 0.0 1 43 55 98 55 100 0.95 2 2 5.5 1.1e+04 -2.6 0.5 3 13 192 202 190 206 0.80
Sequence Information
- Coding Sequence
- ATGTTGGAGAACTCACATTCCTGGATGGGCGCTTCAACATCCTCAATTGCAGCAGACAGCTATCAATATCAATTACAGTCCATGTGGCAAAAATGTTGGAATACCAATCAAAATCTTATGCATCATTTGCGTTTTCGCGAGCGTGGTCCTTTAAAATCCTGGCGCCCAGAAACTATGGCCGAGGCCATTTTTAGCGTACTCAAGGAGGGTCTCTCGCTGTCACAGGCAGCACGTAAATACGATATACCCTACCCGACATTTGTGCTCTATGCGAATCGTGTACACAACATGCTAGGGCCCTCCATCGATGGCGGTCCAGATTTGCGCCCCAAAGGCAGAGGACGTCCACAACGAATTCTTCTGGGCATTTGGCCAGATGAACATATCAAAGGTGTTATCAAGACTGTGGTTTTCCGCGATGCAAAGGATATCAAAGATGAAGGACTCACACATCTACCTTATGGCCGACATTCGCCAGTTTTTCCCTTTCAAGAGGGTCATCTGGGCTATGGTGGCGTTGGTGGTCCCTGCCCGAATGGCATGCCTACACCTACAGGTGATCAAATGTCTCAGGAGGCCACCGCAGCAGCTGTTGCAGCTGTGGCGCATAATCTGCGCCAGCAAATGCAAATGGCCGCCGTTGTCCAGCATCAACAACAGCATCAACATCAACATCCGGAGTCTGCGCCGGGTGCAAATATCTTTAATTTGCCACCGCATCTACAAACACATCTGGCTGGTGCTGCTGGCGGCGGTGCAGTGAGTGGTCCAGGCCCGGGTGGGATACCGCTGCCGAAGCCAAATATATCAGCGGCAGCTAATAGCAGTTCGAGCACAGCTGGTGCTATGCTTGGTGCACGACATGCACAGTCAACCTGCAGCAGTGGCATGTCTGGTATGCCTAATCTGCCACCTGGTATGGCCGCTGCCTTGCATGGTGGTCCATCTGCGGCCATGTTAAGTCAGCAACAGCAGCATCAACTGCAGCAGCTACATCTGCAGCAGCAGCATGCTCTGCATCAGCAACATCAACATCAGCTTAAGCAACAATCACCCGCACACATGGCGTTTCTTGCATCTGCAGCAGCCTCAACGTCGGCAGCAGCCGCCTCCTCGTCCGCTGCGTTACACCGTCATCAGCAGCAACAACAACAGCAGCAGCAGGCTGTAAGTTCGTCTGCGCATTCCTCCACGAGCGGTTCGCCAGCAACTTCATCGAGCCACCAACAAAAATCAACAACATCTTCGCTGCATGGTGAACGCCGACATGGCAGTCCTCCCAACAGCACGCCGCTTCACTCACCACTCACTGATTTGGGCCTGGATCCAGCAGGAGGGCCAGTTGGCATCAGCGGCATGGCTTACAAACCATCACGCGGCTACTCTTCACCACGTGGTGAGCATCTGTTTCAGGAGGATATCGCCGATTTGGTAGGCAGTAATGTTGGTGCTTCCAGCTCAGCCGTATCAGCTGCATCAAATGTTGCTAGTTCGACAACGGCAACGACATCAACGACAGCAGCAACAATAGATGCCAATGCCTCGAACAGTAGCAGCATTAAAATCGAGCCACTTGTTATGAGCAGTGAATGA
- Protein Sequence
- MLENSHSWMGASTSSIAADSYQYQLQSMWQKCWNTNQNLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKDIKDEGLTHLPYGRHSPVFPFQEGHLGYGGVGGPCPNGMPTPTGDQMSQEATAAAVAAVAHNLRQQMQMAAVVQHQQQHQHQHPESAPGANIFNLPPHLQTHLAGAAGGGAVSGPGPGGIPLPKPNISAAANSSSSTAGAMLGARHAQSTCSSGMSGMPNLPPGMAAALHGGPSAAMLSQQQQHQLQQLHLQQQHALHQQHQHQLKQQSPAHMAFLASAAASTSAAAASSSAALHRHQQQQQQQQQAVSSSAHSSTSGSPATSSSHQQKSTTSSLHGERRHGSPPNSTPLHSPLTDLGLDPAGGPVGISGMAYKPSRGYSSPRGEHLFQEDIADLVGSNVGASSSAVSAASNVASSTTATTSTTAATIDANASNSSSIKIEPLVMSSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01414886;
- 90% Identity
- iTF_01414886;
- 80% Identity
- -