Tmes017888.1
Basic Information
- Insect
- Tenthredo mesomela
- Gene Symbol
- -
- Assembly
- GCA_943736035.1
- Location
- CALSEY010000214.1:500041-502770[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.55 1.1e+02 4.9 4.3 1 23 115 138 115 138 0.94 2 13 1.6 3.2e+02 3.4 1.3 2 20 204 219 203 223 0.70 3 13 9.9e-05 0.021 16.6 1.7 2 23 322 343 321 343 0.96 4 13 2.7 5.7e+02 2.7 0.1 6 20 433 447 431 449 0.86 5 13 0.17 35 6.5 0.8 1 23 615 637 615 637 0.97 6 13 0.1 21 7.1 0.3 2 21 670 689 669 690 0.89 7 13 9.9e-05 0.021 16.6 0.1 1 23 705 728 705 728 0.97 8 13 5.3 1.1e+03 1.7 0.3 1 22 735 756 735 758 0.76 9 13 0.96 2e+02 4.1 0.7 3 23 764 784 763 784 0.91 10 13 0.00046 0.096 14.5 7.0 1 23 789 812 789 812 0.98 11 13 2 4.1e+02 3.1 3.7 2 23 821 841 820 841 0.95 12 13 0.0037 0.76 11.7 0.6 2 23 846 868 845 868 0.92 13 13 0.0013 0.26 13.1 0.2 2 20 877 895 876 897 0.95
Sequence Information
- Coding Sequence
- ATGGATTCGCATTCAAAGTTGGAAAATCCTCACGGATTAAAAGCACCTGTCGTCAAACTAGAGAGATGTGACAAGATTTGGAAGACTCTTCAGCTGATAAGAAGCATGCAAGACAAACACCTCGAAGATATAGAAGATTGGATAAAAAGGGAACCAATAGCTTCGGAAAAATATTTTACAACACAACCGCCCATGACTTATATACCGGATAAATCACTGCCTCTGAACCTTATAGGTGAACCAAATTTGCCAAAACCATACATAAAGTATCAGCCAATATTTAACAACGGCGATGAATCATTGCCGCAATTTAAATTGGCTGAAAAAAGTCGAGTTAATTTATATCATTGTGAAATATGTAGCCAGGAGTACTGCAATTATAAAAGATTTACCGATCATCAAGAAGAAATACATGGAATATCTATTCCAAAGAGAATGGTAGCTAAGAGAGAAAGGGTGCAGAATAAAAGTAACAGCGAATTAAAAACTAGGCGTCATTCGACGGATATTATTAACAATCATATTATATTAAATGACAAATTAGTATCAGATGAAAATATTGACCTACAAGCTCTTGTTAAGAATTCACCACCGCAAGCTGATAGTATTAGATGTAAATTATGCAGCAAATATTTTAAGAATATTAAAAAACACATGATAGATTATCATAAAATTAGGTGTATAGGAGTATTGAGCAAAGTAACTGATCAGAATTCAAATTTACATCAAGAACATTCTCTCGTGGTACTTGAGCCGGGGGATTACACTTCTTTACCTGAATATTTAGAGCCGAATGTACAGCAAACAGAGCTAGTCATATCACAGGACGTTAATTTTTCTATTCAAAATACAACTAATGTATCTAAGCGGAAACTAAGCATGCCTAGTGTAGGAACTTGCAAAAGATTTCGTAGCATTTGTCCTCGGGAAGAGGCGGAAGACACAGGAATTAAACAGCAATTAAAATGCGAGATTTGCGGCAAAGAATATGCTAATTATAAAGCGCTATGTAAACACAGGGATAGGCACAAGAATCTAAACGAAGACAAGCAACCTTCTGAGACTAAGAAAAACAGAAATGAGTCTGTCGACTCGGCTTCTAGATCCAAAACTAGTCTAGAAATTTCTGTTAAATCTACACGAGATAAAGATAAAGACAATAGTAATATTAGTAACAAAATACCACGAACAAGGTCCAGTTTTACCAAAGAACGTAGAAGTTCAGATGCATTAGAAAATGAAAACGTATTATCATTGGAAAAGAGAGAAGAGAACTGTTTGCAAATAAAATGCGCTTGCGGCAGAACTTTTCGCACTACATCCATTCTTTCTATTCATAAGATGGCTTGTAAATTTTTAAACGATACAGACAACAGTAAATCTCCTGATGTACGAACTGGAAGTGATAGAGATTCAGGGATTAGCATAACGATCAAAAAGAAGAATAACTCCTATGAAATAGTGAGTAAAGACGGTAGCGATGAAGAGCCTTTGAAAAATGATCAGAATGTTGAAGAGGAGGAAATGTGCGAAGAGACTTCGGATTCTTCATCTGATAATTCGGATAGCCCGGAGTTTGACGATCAGCTAGAAAACTTAGTACCAGAAAAATCAAAGTACAGTGAGAATCATAGAATTCTGAAGTTGAAATTAGCCGAAGAAGATGTGGACGTTGATATTGAGGAGGAAAATGATATCGTGTCCAAGATAACTTCAAACACAGTAGCTCAGAATTTTGAGAGCAACATTTCTACTGTTAATGAACATCAGGTTCCATTGTTGAGACTCTTGTGCAAAAAGCTTCTCATTAAACAAGGTCTGATGCGAAAGGAAGAGACATCACACCAGTGTGAGACTTGTGGAATATACATCGGAAGTAAAGAAAGATTGTCAAAGCACGTTGAGAAGCACAAAAAAGTAATGAAAAGATCTTGTAGTTGCGGTATAAAATTCACCTGTATGAAAACATTTGATGAACACATTGCGGCGGTTCATCCAAAGTCTGTAACATGCCCTTATTGTCATGAAAAGTATAGAAGTATCGTTGGTTTGGGGGAGCACTTGTGCGTAGTCAATCAGGGATCACCGTACATAGAAACTTTGGACGAAAATTATCCTTGCCCAAATTGTAATATTGCTTTTAATAATATCACCTGGTTAAACAGTCACATGATATCCAAGCACTTAGATAAAAATTTACCCTTCCAGTGCTATCAGTGTTTGGAAAAGTTTCCCAACGAGATAGAAAGGGGCTTACACGCGCAAAAAGAGCACAATCATGAATCGGCATGCTCTGTTTGTAATGAAAAATTTCAGAGTATTAAAACAAAACAAAAACACGAGGCATATCATCGAGGAGTTGGATTCCCGTGTCATAAGTGTAAGAAGACTTATCGTTCGAAAAAGAATAGAATACATCATGTTAGAACTGTTCACAGTGATTACAGCAACGATAAATTAACATGCTTTATTTGTCAAAAAAGCATAAAAGCTAAGTCGTTTAGAAAGCATGTACACAAACACAATAGTAGTTTAAAATGTGAGATGTGCGATAAGGTGGTATATGACATCAGAAATTTAGAAAGCCACATTACTGACTGTCATGATACCAAAAATTACCCGCGTAAGAAGTGTAAGACTTGCGGTGTGTCTTTTCCAACTGAAGAACTATTGCAGCTACATATTACCTTCGAAAGATATGCAAAAAACGGACACTGCAAGGATGTGTAA
- Protein Sequence
- MDSHSKLENPHGLKAPVVKLERCDKIWKTLQLIRSMQDKHLEDIEDWIKREPIASEKYFTTQPPMTYIPDKSLPLNLIGEPNLPKPYIKYQPIFNNGDESLPQFKLAEKSRVNLYHCEICSQEYCNYKRFTDHQEEIHGISIPKRMVAKRERVQNKSNSELKTRRHSTDIINNHIILNDKLVSDENIDLQALVKNSPPQADSIRCKLCSKYFKNIKKHMIDYHKIRCIGVLSKVTDQNSNLHQEHSLVVLEPGDYTSLPEYLEPNVQQTELVISQDVNFSIQNTTNVSKRKLSMPSVGTCKRFRSICPREEAEDTGIKQQLKCEICGKEYANYKALCKHRDRHKNLNEDKQPSETKKNRNESVDSASRSKTSLEISVKSTRDKDKDNSNISNKIPRTRSSFTKERRSSDALENENVLSLEKREENCLQIKCACGRTFRTTSILSIHKMACKFLNDTDNSKSPDVRTGSDRDSGISITIKKKNNSYEIVSKDGSDEEPLKNDQNVEEEEMCEETSDSSSDNSDSPEFDDQLENLVPEKSKYSENHRILKLKLAEEDVDVDIEEENDIVSKITSNTVAQNFESNISTVNEHQVPLLRLLCKKLLIKQGLMRKEETSHQCETCGIYIGSKERLSKHVEKHKKVMKRSCSCGIKFTCMKTFDEHIAAVHPKSVTCPYCHEKYRSIVGLGEHLCVVNQGSPYIETLDENYPCPNCNIAFNNITWLNSHMISKHLDKNLPFQCYQCLEKFPNEIERGLHAQKEHNHESACSVCNEKFQSIKTKQKHEAYHRGVGFPCHKCKKTYRSKKNRIHHVRTVHSDYSNDKLTCFICQKSIKAKSFRKHVHKHNSSLKCEMCDKVVYDIRNLESHITDCHDTKNYPRKKCKTCGVSFPTEELLQLHITFERYAKNGHCKDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01412690;
- 90% Identity
- -
- 80% Identity
- -