Tdis001818.1
Basic Information
- Insect
- Tenthredo distinguenda
- Gene Symbol
- -
- Assembly
- GCA_947538915.1
- Location
- OX384536.1:14112816-14115539[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.72 99 4.5 4.9 1 23 115 138 115 138 0.94 2 13 1.4 1.9e+02 3.6 2.5 2 20 203 218 202 222 0.70 3 13 0.00086 0.12 13.7 2.3 3 23 321 341 321 341 0.98 4 13 6.6 9e+02 1.5 0.1 6 20 431 445 430 447 0.89 5 13 1.3 1.8e+02 3.7 1.6 1 23 613 635 613 635 0.96 6 13 0.1 14 7.1 0.3 2 21 668 687 667 688 0.89 7 13 1.6e-05 0.0021 19.2 0.2 1 23 703 726 703 726 0.98 8 13 1.9 2.6e+02 3.2 0.4 1 23 733 756 733 756 0.90 9 13 1.1 1.5e+02 3.9 0.7 3 23 762 782 761 782 0.91 10 13 0.00018 0.025 15.8 6.1 1 23 787 810 787 810 0.98 11 13 1.6 2.2e+02 3.4 4.0 2 23 819 839 818 839 0.95 12 13 0.0037 0.51 11.7 0.6 2 23 844 866 843 866 0.92 13 13 0.00048 0.067 14.5 0.1 2 20 875 893 874 895 0.94
Sequence Information
- Coding Sequence
- ATGGATTCGCATTCAAACGTGGAGAACCTTTACGGATTGAAAGCTCCTGTCATCAAACTAGAGAGATGTGACAAGATTTGGAAGACTCTTCAGCTGATAAGAAGCATGCAAGATAAACACCTTGAAGATATCGAGGATTGGATAAAAAGGGAACCAATAGCGTCTGAGAAATATTTTAGAACACAACCACCCATGACTTATATACCAGATAAATCACTGCCTCTGAACCTAATAGGTGAACCAAATTTACCAAAACCATACATAAAGTATCAGCCAATATTTAACAATGGTGATGAATCGATGCCGCAATTCAAATTAGCTGAAAAAAGTCGAGTTAATTTATACCATTGTGAAATTTGTAGCCAGGAGTACTGCAATTATAAAAGATTTACCGATCATCAAGAACAAGTACATGGAATTTCAATCCCAAAGAGAATGGTAGCTAAGAGAGAAAGGGTGCAGAATAAAAGTAACAGTGATTTGAAAAATAGGCGTCATTCAGTGGAGAGGTACAATCATATTAAATTAAATGAGAAGTTAGTATCAGATGAAAATATTGACCTGCAAACTGTTATTAAGAATTCTCCGCCACAAGCCGATAGTGTTAGATGTAAATTATGTAGCAAACATTTCAAGAATATTAAAAAACACATGATAGATTATCATAAAATTAGGTGTATAGGAGTACTGAGCAGAGTAACTGACCCGAATTCAAGAGCACATGAAGAACAATCTCTTGTGGTACTTGAGCCGGCGAATTACACTTTACCTGAATATTTAGAGCAGAATGCAGAGAAAACAGAACAAATAACATCACAAGATGTTAATTTCTCTATTCAAAATGCAACTGATGTATCTAAACGGAAACTAAGCATCCATAGTGTAGGACCTTGCAAAAGATTTCGTAGCATTAGCTCTCAGGAAGAAGAATCAGATAGAGGAATTAAACAGCAATTAGGATGCGAGATTTGCGGCAAAGAATATGCCAATTATAAGACCCTATGTAAACACAGGGATAGGCACAAGAATCTAAACGAAGACAAGCAACCTTCTGAGACTAAAAAAAACAGAAATGAGTCTGTCGACCCAGCTTTAAGATCCAAAACTAATACGGAAATTTCTGTTAAATCTACACTAGACAAAGATAAAGATAATAGTAATATTGGTAACAAAATACCACGAACTAGGTCCAGTTTTACCAAAGAACGTAGAAGTTCCGATGCATTAGAAAATGATAATATATTATCATTGGAAAAGATAGATAAGAAACATTTGCAAATAAAATGTGCTTGCGGCAGAACTTGCCGCACTGCATCCATTCTTTCCAATCATAAGTTGGTTTGTAAATTTGTAAACGATATGGACACCAGTAAATCTTCTGATAGACGAACTGGAAGCGACAGAGATTTAGGGATCAGCATAACAATCAAGAAGAAGAATAACTCTTATGAAGTAGTGAGTAAAGACGGTAGCGATGAAGAGCCTTCAAAAAATGGTCCCCACATCGAAGGGGAGGAAATGTGCGAAGAGACTTCGGATTCTTCATCGGACAATTCGGACAACACCGAGTTCGACGATCAGCTGGAGAATCTAGTACTAGAAAAGTCAAAATACAGCGAGAATCATACAATTCTGAAGTTGAAATTAGTAGAAGAAGATGTGGACGTTGATATTGAGGAGGAGAATGATATCGTATCCAAGAAAACTTCAAACACAGTAGCTGAGAATGTTGAGAACAAGATTTCTACTATGAATAAACAGCAGGTCCCGTTGTTGAGCCTCTTGTGCAAAAAGCTCCTCATTAAACAAGGTATGATGCGTGAAGAAGAGACATCACACCAGTGCGAGACTTGTAAAATATACATCGGGAGTAAAGAAAGATTGTCAAAGCATGTTGAGAAGCACAAAAAAGTAATGAAAAGATCTTGTAGTTGCGGTATAAAATTCACGTGTATGAAAACATTTGATGATCACATTGCGGCAGTTCATCCGAAGTCTGTCACATGTCCTTATTGTCATGAAAAGTATAGAAGTATCGTTGGATTGGGGGAGCACTTGTGCGTAGTTGATCAGGGATCTCCGTACATAGAAACTTTTGATGAAAATTATCCTTGCCCAAATTGTAATATTGCTTTTAATAATATCACCTGGTTAAACAGTCACATGAGATCCAAGCACTTGGATAAAAATTTACCCTTCCAGTGCTATCAGTGCTTGGAAAAGTTCCCCAATGAAATAGAAAGGAGCTTACATGCGCAGAAAGAGCATAATCATGGATCGGCATGCTCTGTTTGTAATGAGAAATTTCAGAGTGTTAGAACTAAACAAAAACACGAAGCATATCACCGAGGAGTTGGGTTCCCGTGTCATGATTGTAAGAAGACTTATCGTTCAAAAAAGAATAAAATACATCATGTTAGAACTGTTCACAGTGATTATAGCAACGATAAATTGAAATGCTTCATTTGTCAAAAAAGCATAAAAGCCAAGTCATTTAGGAAGCATGTACACAGACACAATAGTATTTTAAAATGTGAAATGTGTGATAAGGTGGTATATGACATAAGAAATTTAGAAAGCCACATTACTGACTGTCATGGTGACGAAAATTACCCACGGAAGAAGTGTAAAACTTGCGGTATGTCTTTTCCAACTGAAGAACTATTGCAACTACATATTACCGTTGAAAGATCTGCAAAGAATGGACACTGCAAGAATGTGTAA
- Protein Sequence
- MDSHSNVENLYGLKAPVIKLERCDKIWKTLQLIRSMQDKHLEDIEDWIKREPIASEKYFRTQPPMTYIPDKSLPLNLIGEPNLPKPYIKYQPIFNNGDESMPQFKLAEKSRVNLYHCEICSQEYCNYKRFTDHQEQVHGISIPKRMVAKRERVQNKSNSDLKNRRHSVERYNHIKLNEKLVSDENIDLQTVIKNSPPQADSVRCKLCSKHFKNIKKHMIDYHKIRCIGVLSRVTDPNSRAHEEQSLVVLEPANYTLPEYLEQNAEKTEQITSQDVNFSIQNATDVSKRKLSIHSVGPCKRFRSISSQEEESDRGIKQQLGCEICGKEYANYKTLCKHRDRHKNLNEDKQPSETKKNRNESVDPALRSKTNTEISVKSTLDKDKDNSNIGNKIPRTRSSFTKERRSSDALENDNILSLEKIDKKHLQIKCACGRTCRTASILSNHKLVCKFVNDMDTSKSSDRRTGSDRDLGISITIKKKNNSYEVVSKDGSDEEPSKNGPHIEGEEMCEETSDSSSDNSDNTEFDDQLENLVLEKSKYSENHTILKLKLVEEDVDVDIEEENDIVSKKTSNTVAENVENKISTMNKQQVPLLSLLCKKLLIKQGMMREEETSHQCETCKIYIGSKERLSKHVEKHKKVMKRSCSCGIKFTCMKTFDDHIAAVHPKSVTCPYCHEKYRSIVGLGEHLCVVDQGSPYIETFDENYPCPNCNIAFNNITWLNSHMRSKHLDKNLPFQCYQCLEKFPNEIERSLHAQKEHNHGSACSVCNEKFQSVRTKQKHEAYHRGVGFPCHDCKKTYRSKKNKIHHVRTVHSDYSNDKLKCFICQKSIKAKSFRKHVHRHNSILKCEMCDKVVYDIRNLESHITDCHGDENYPRKKCKTCGMSFPTEELLQLHITVERSAKNGHCKNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01414530; iTF_01303775; iTF_01411904; iTF_01413736;
- 90% Identity
- iTF_01411904;
- 80% Identity
- -