Basic Information

Gene Symbol
Jarid2
Assembly
GCA_943736035.1
Location
CALSEY010000170.1:298922-305884[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 10 4.7e+04 -4.0 0.2 69 82 161 178 139 179 0.58
2 2 9e-23 4.3e-19 70.1 0.0 6 89 1299 1380 1295 1380 0.94

Sequence Information

Coding Sequence
ATGGTACTCAGTAGAAATGACAAAAGGAAGAGAAAGGAAGGTGATCTTGTCGATCTCATGGATCCTCTTTCCGAATCTCCAAAGAGAACCAAGGTCCATGCGCAAAGGAAATTTGCTCAGGGTGTAGCGACCATATTTGGTCCAACACATCCTGCTATAAAGGAAAAGGAAAAGGCAAAACCTGCGGTAATAACAGAACTGATAACACACAGACGTCCTAACACAGAAGACTTTCTTACATTTTTATGTTTCAGAGGAACTCCGATACTTCCTCCGAGCTTGGATTTCTTCAACAATGGAAACAGGAAGGAAAAACAGGAACAAAAAGCCGCTGGCAATACTGCGAAGAATAATTCATCGTCCTCTGCAATGTCAACTCCTGTGATAGACAACCCAAAACCGACTACAACTAGCCAGAAATTGAGCGGAAAAAATAACAGCAGTTCTGTTGATAAGAAGACTACGATACAGAAGAGTATTGCTAAGTATAAAACTGCCACGTCCACCGTTCAAGCATTGAAGAAGAAATATCAGGAACAACGTTTAGCAAAACAAAGAATAAAGAACAAATTTAAACCCACATGTGTTATGAGGACGAGGTCTTCTACTGATCAAGCTAAAATTAAAGCTAACAGTAATTTATCGCCTAGAAAATTTTTGCCTAAGGTTGAGACCAAGAGACATTGTTTAAGGAGTAGCGCCCTTGCAAATAAGAGTAAAAACTTGGGTGTTACAAAGGGAAAATCAGATTCACCAAAACCTAAGAAGAGAATTTTTGTTAAAGATAAATCTGTCGAATCTTCTAACACAGATGTATCTTCGGACGATAATTCACCTCTCATTAAATCTTCGCAACGCAAAAAAGGACAGACTAAAGTTCTTAAAAAAGTTTGCACTAGGAGTAAGTCGGAAATGAGAAGGATAACTAGATCTCATAGAGAACCTACTCAGCCGCAAGTTCTATCTAGACGTCCTTCCAGAAAGACTAAAGAAGCCGCTGCTGTTTATATGGAAATTCTTGGCAGAAAATTAGTCAGTCCTGATTTAGATAACGAGGATAATTTGTCGGTCGACAGTTTTCCCGAACTTCCTAATGCCAAAAGATATGCACAGACTGAAAATGAGATACGAGCAAAAGTTAAACAGTCTTCTAAATTGAATAGCAGTAGCAAAGATACAAAGCTTGATAATAACAAGGCGAGTAGCACGCGACTTAGTAAAGATAAAGTTGATAAGAAAGTGGTAAAGAATAAAAGACCTATAAAAGTACAAAAGTATTGCGAATTAGACAGTGAAGATGACTCGGCTTGTTCTGTACTGTCTGAGAATGTGAAGCCTGTGACCAGAAGGAGTCTTGGAAAATTGCCTGAGCCGACTAGCAGAAGTCTCCGATCTTCGCCAAGAAATATAGTGACAAAGTCGCAGCCAGAAAAGATGCCTAAAGATAAACCTGAGAAAGATAAAATATTAGTGAAACGAAAGCGGGAACAAAACGCTGGAAAATTAACACCTGCAAAGACTAATGTGGTTAAACCAAAGCCAACAAAAAGTAAGAACAAAAGCGATAGCTCTGAATCTGAGGAAGAAACTTTGGGTATGCTGCTCGATAAGTTGAATAAAAAGAAAGTCAAAGCTGAACCAGTTAAGGTGGAGAAAACTGAGAAGATAAACAGCGAGAATAGCCCCCCAGCAAACACTGTTACCGTCAAGTACGACACGTCTAAAATATCCGACGACGAAGAGTCTTTCAGAGGATTTTCTAATAAAGCTATAACTAAAGTCTTGAACTCTTGTCATACTCATGTTAAAGCTAATTTACTTGCATCCGAGGACACGGACGGGAAATTGGATGTGCTCAAAACACAAGACACGCCCCAAACGGATACCTCGGATATAAGAATTGAGCAATTCTCAGTTATTGATACCAGCGTGCTTCTGCCTGTAAATATAAGCCCAGATTATACATCGGTCAAGCCCGTCCCAGAAGATTTAGCACTTTCAGACTGTAAGTCTATACCGCCAGCTCAGCCTCTGCTTCCAATGATCCCAGAGAAAGTTTGTAATCACGAACCGAGCGAGTCTACAGTTAATATTATAGACATGCCTCGGTCCGCTTCTCTTGGACGCAAAGAAAGAGTTAACATGTCTACAGAGCAGATTGAAAAATGGTTGAACGAGAGCTCGATGGCGAAGGAAGAAAGCAAAGCAGAAATGGAAAACGTGACTAGTTTCAAATACGAGAATGCGGTGAAAGTCAAGAGCGATGTTAGCCATATATCTATATCTACCAGAATACAGCATTTGGTTCGACCCGTTAATATCAGCCTTGCTAAAACGACTGAGAAAAATAGTTACAAGAATAATTTAATTCAGAGTAAAATGGCACTTATACCGAATTTAAATCTCCTACATTCTCCGACTAAACAACAGTGCATACCGCCCAATCGCAATCGGATAAATGCTGATATAAAGGAGATAATCAAGGGCCGGAATATCAAGACTAGCAAAGACTCTTCTTTCGGTGAAGATAGCGACGCCGTTTCTAAATCTGATCATAACTCTGTGGATGGATCACCAGAGAAGAAATCACCGGAGAAAAAATCAGTCCAATTGAAAAAACCTTTTCTGCCCAAAGTAAAAGAACGTAAGGATATCACTCCGAGTGCTAATGCATTTTCACCAGAGAACGAAAGTAGTGTATATGCATTCGAGAGCGATACTGAGACTCCAATTAGTACTCCGTTTAGACGGAGACTTAAGGACATTGAGAATAAACCGGACAGTCTTCCTCTGGCTTCTGAGGACGAGGCCACGAAGACTGGAGAAGAGACGCAGGAAGGACAGAGTCAGCAACAGTCTGATACTCCAAAACTGAATCGATTCGAATTACCTAAAAATTTTGCTGATCTGGCGACGATGCAAGTCTTGCCTATAGACAAACTTACAACAAGCTGGAGCAACGTTGGATGCAGCGCTTCTATCGCTGTTCAAGTTAATCTGGACGAGCAATCCCAAGAGCCGCAGATAATGGCTGATGAGTCTGTTCTAAAAAGCACAGAGATATCTACTCAAACAGATAGCAATAATGAAAATGAAGACGATAACGATGGCCAGCTGTTTTATATTCCTTTACAAGCTATGACCAGAAATGGTCCTAACTTGGTACAGGGTCAACAGCTGATTCAAGGCGTTGCCGTTAAACTTGGTACCGAAGGTCCAACTGGTCCTAATCAAAGGGTTTTACTGAGAGCTAAACTAGTCACTAAACCACCTTCAACCGTAGCTCGATGCCCACCTGTGGGTACAGTACAACCAACCGCTCGTGTCCCTCAGAGTTCTACAACTTTGATTATCGATAATTCTGGTCCTTCGACTTCTACAAATTTACCAATACCATCTACGTCCAGTTTTCAGCAACCTTTACCTAATAGAAATGTTACGATAACGCAGACTACGAGTAGACAGAACGCTGCTACTGGGACGGGAACTAGTCTGGGATCAGAAAAGGTTCAAAAGTCTCCTAAGACTTCTAGAGAAAGAAAAGCATCCATAGATTCTGTTAAAAGCGTTAAACGACCTCAATCTAAGTCCAAACAGAAAATATTAGAGTTCTGTTCTCCGACCAATACAACTACCTTTCCAAGCCCAAAGAATTCTAACGAAGAAGCACGTCTCGTCGAAGCGCCTACTTTTCATCCGACTGAAAAAGACTTCCAAGATCCTTTGGAATACATTGATAAAATAAGACCTATTGCTGAGAAGTTTGGAATTTGTCGCGTCGTACCACCACCGAATTTCAAACCTGATTGTAAAGTATCAGACGATATGCGATTCACTGCATACAATCAATACGTTCATCGAATGCTGCACAGATGGGGGCCCAATGTTAAGGAAATGATGGCAATAAAAAAGTATTTAGCCACACAGAGTATTACACTCACTCATCCTCCCTGGATCGGTGGTATGGAGGTAGACTTGCCACACTTGTATCAAACAGTGCAGAGTCTAGGCGGATTGAAAGAAGTTATTGAAAAAAAGAAATGGCAAAAGGTTGCTGACGGTATGAAAATACCAAAATCAGCCCAAGATCGAGTGACTAAATTGGACGATATTTATTGTAAATATTTATTGCCGTATGACACGCTTTCACCAGAGGAGAGAGAAAAACTATTTGACGAAGTAGAGACTGATTGGGCTAAACGAGAAAGCAAGGCTTTACAAACGCAAACTGCACCGTCAAGCGATAATGACGCTGAAGATGACGACGAGGATAGCTCTGACGAGACTGAGGAATGTATTGTCAAGGGGAGAAACATGCCGCTGAATGCTTTCTACCGTATCGCACGAAACACACAACGTATGTGGTTTGGTGAAAGTCAGCCACCAGCAGGTGAGGCTGAAGGCGCATCTGCAAACGATGTTGAAACAGCATTTTGGAAACATGTAGCAGAACGGAAACGGCACGTTTGTGTTCACGCAGCCAGCATTGATTCCAGTGGTCGAGGTTTTGGATTTTCTGTTGCTAAAAACAGTCCGTTTGCTAGACATCCTTGGAATCTTAAAGTACTGACTAATAATGCTGGTTCGGTACTAAGGGCATTGGGACCTCTAATGGGTGTAACCGTTCCGACACTACATGTTGGAATGCTGTTCAGTGCCTGTTGTTGGTACAGAGATCCTCACGGTCTACCATGGATAGAATATCTTCATACCGGTGCTAAGAAAATCTGGTATGGTATCCCAGATGAACACAGCGATAACTTTAGAGATGCTCTGTCCAAAATGGTGCCACGTTATTGCAAAAATAAAACCATTTGGTTGCCCTCCGACACGGCTATGGTCCCACCAGAATTACTTGTTAAAAATGGAGTTCCATTGTGTCAGACAGTCCAGGAGCCAGGACAATTCATTATAGTATTTCCCAAAGCCTTTACATCGAGCATTTGCACTGGGTATCTTGTATCTGAAAGTGTATACTTTGCACAAGCTTCATGGCTTGTTACTGCGGAACAAGTTTTCAAGGACATACAGGAGAGCTGTGAACCGTCGATATTCTCATTTGAGAGACTGCTGTTCAGTATTATTAATGATACTAGATCCCACGTTGAAGTACTTAAACAGATATTACCAACTGTGATGAATATTCGTGAAAGAGAATTGGAGTATCGTAGACTGTTGGAAAATGCTAGTCTGACGAATACTGAAAGGCTACCTTTACCTGATAGTGGAAAACGGAGAAGAGGTAAAAAGGTGAAGGAAGAAGACGGGGACTTTGAGTGTGAAACTTGTCGTGCCAATCTGTTCGTTTCGCTAGTTAGCAATTCGCAAGATGATTGTGTTTACTGTCTTCCACATGCTTGTCAAATACTTACCAGAAAGAAACAGCTATTGAAACACTGTACTTTGATGTACACATACAGTGAGGTGGAATTAGATGATCTCATTCATAAATTGGAGGATAAAATCGAAGCCAAATCTAAGAAGACTAATCAAATGAGACAAGCTAAATAA
Protein Sequence
MVLSRNDKRKRKEGDLVDLMDPLSESPKRTKVHAQRKFAQGVATIFGPTHPAIKEKEKAKPAVITELITHRRPNTEDFLTFLCFRGTPILPPSLDFFNNGNRKEKQEQKAAGNTAKNNSSSSAMSTPVIDNPKPTTTSQKLSGKNNSSSVDKKTTIQKSIAKYKTATSTVQALKKKYQEQRLAKQRIKNKFKPTCVMRTRSSTDQAKIKANSNLSPRKFLPKVETKRHCLRSSALANKSKNLGVTKGKSDSPKPKKRIFVKDKSVESSNTDVSSDDNSPLIKSSQRKKGQTKVLKKVCTRSKSEMRRITRSHREPTQPQVLSRRPSRKTKEAAAVYMEILGRKLVSPDLDNEDNLSVDSFPELPNAKRYAQTENEIRAKVKQSSKLNSSSKDTKLDNNKASSTRLSKDKVDKKVVKNKRPIKVQKYCELDSEDDSACSVLSENVKPVTRRSLGKLPEPTSRSLRSSPRNIVTKSQPEKMPKDKPEKDKILVKRKREQNAGKLTPAKTNVVKPKPTKSKNKSDSSESEEETLGMLLDKLNKKKVKAEPVKVEKTEKINSENSPPANTVTVKYDTSKISDDEESFRGFSNKAITKVLNSCHTHVKANLLASEDTDGKLDVLKTQDTPQTDTSDIRIEQFSVIDTSVLLPVNISPDYTSVKPVPEDLALSDCKSIPPAQPLLPMIPEKVCNHEPSESTVNIIDMPRSASLGRKERVNMSTEQIEKWLNESSMAKEESKAEMENVTSFKYENAVKVKSDVSHISISTRIQHLVRPVNISLAKTTEKNSYKNNLIQSKMALIPNLNLLHSPTKQQCIPPNRNRINADIKEIIKGRNIKTSKDSSFGEDSDAVSKSDHNSVDGSPEKKSPEKKSVQLKKPFLPKVKERKDITPSANAFSPENESSVYAFESDTETPISTPFRRRLKDIENKPDSLPLASEDEATKTGEETQEGQSQQQSDTPKLNRFELPKNFADLATMQVLPIDKLTTSWSNVGCSASIAVQVNLDEQSQEPQIMADESVLKSTEISTQTDSNNENEDDNDGQLFYIPLQAMTRNGPNLVQGQQLIQGVAVKLGTEGPTGPNQRVLLRAKLVTKPPSTVARCPPVGTVQPTARVPQSSTTLIIDNSGPSTSTNLPIPSTSSFQQPLPNRNVTITQTTSRQNAATGTGTSLGSEKVQKSPKTSRERKASIDSVKSVKRPQSKSKQKILEFCSPTNTTTFPSPKNSNEEARLVEAPTFHPTEKDFQDPLEYIDKIRPIAEKFGICRVVPPPNFKPDCKVSDDMRFTAYNQYVHRMLHRWGPNVKEMMAIKKYLATQSITLTHPPWIGGMEVDLPHLYQTVQSLGGLKEVIEKKKWQKVADGMKIPKSAQDRVTKLDDIYCKYLLPYDTLSPEEREKLFDEVETDWAKRESKALQTQTAPSSDNDAEDDDEDSSDETEECIVKGRNMPLNAFYRIARNTQRMWFGESQPPAGEAEGASANDVETAFWKHVAERKRHVCVHAASIDSSGRGFGFSVAKNSPFARHPWNLKVLTNNAGSVLRALGPLMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPDEHSDNFRDALSKMVPRYCKNKTIWLPSDTAMVPPELLVKNGVPLCQTVQEPGQFIIVFPKAFTSSICTGYLVSESVYFAQASWLVTAEQVFKDIQESCEPSIFSFERLLFSIINDTRSHVEVLKQILPTVMNIRERELEYRRLLENASLTNTERLPLPDSGKRRRGKKVKEEDGDFECETCRANLFVSLVSNSQDDCVYCLPHACQILTRKKQLLKHCTLMYTYSEVELDDLIHKLEDKIEAKSKKTNQMRQAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00938450;
90% Identity
iTF_00939305;
80% Identity
-